Mercurial > repos > fubar > blasttools_search_test

comparison blasttoolssearch/blasttoolssearch.xml @ 1:5687b8f1ad69 draft

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fix datatype for summary
author fubar
date Wed, 19 Jul 2023 05:48:53 +0000
parents ee581a90a85e
children e213ae40f480
comparison
equal deleted inserted replaced
0:ee581a90a85e 1:5687b8f1ad69
72 done 72 done
73 73
74 #print the header of the inital summary_blastn file 74 #print the header of the inital summary_blastn file
75 cat summary_${var}.txt | head -1 > header 75 cat summary_${var}.txt | head -1 > header
76 #report 1 76 #report 1
77 cat header ${var}_filtered.txt > $3 77 echo "#" > $3
78 cat header ${var}_filtered.txt >> $3
78 79
79 #end raw]]></configfile> 80 #end raw]]></configfile>
80 </configfiles> 81 </configfiles>
81 <inputs> 82 <inputs>
82 <param name="blastn_search_outputs" type="data" optional="false" label="blastn_search_outputs" help="" format="tabular" multiple="false"/> 83 <param name="blastn_search_outputs" type="data" optional="false" label="blastn_search_outputs" help="" format="tabular" multiple="false"/>
83 </inputs> 84 </inputs>
84 <outputs> 85 <outputs>
85 <data name="summary_viruses_viroids" format="txt" label="summary_viruses_viroids" hidden="false"/> 86 <data name="summary_viruses_viroids" format="tabular" label="summary_viruses_viroids" hidden="false"/>
86 </outputs> 87 </outputs>
87 <tests> 88 <tests>
88 <test> 89 <test>
89 <output name="summary_viruses_viroids" value="summary_viruses_viroids_sample" compare="diff" lines_diff="0"/> 90 <output name="summary_viruses_viroids" value="summary_viruses_viroids_sample" compare="diff" lines_diff="0"/>
90 <param name="blastn_search_outputs" value="blastn_search_outputs_sample"/> 91 <param name="blastn_search_outputs" value="blastn_search_outputs_sample"/>