Mercurial > repos > fubar > blasttools_search_test

diff blasttoolssearch/blasttoolssearch.xml @ 2:e213ae40f480 draft

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retry with echo -n so no newline
author fubar
date Wed, 19 Jul 2023 05:54:34 +0000
parents 5687b8f1ad69
children a6593725b728
line wrap: on
line diff
--- a/blasttoolssearch/blasttoolssearch.xml	Wed Jul 19 05:48:53 2023 +0000
+++ b/blasttoolssearch/blasttoolssearch.xml	Wed Jul 19 05:54:34 2023 +0000
@@ -12,7 +12,7 @@
   <version_command><![CDATA[echo "3.0"]]></version_command>
   <command><![CDATA[bash
 $runme
-$blastn_search_outputs 
+$blastn_search_outputs
 $__tool_directory__/BlastTools.jar
 $summary_viruses_viroids
 ]]></command>
@@ -74,8 +74,8 @@
     #print the header of the inital summary_blastn file
     cat summary_${var}.txt | head -1 > header
     #report 1
-    echo "#" > $3
-    cat header ${var}_filtered.txt >> $3 
+    echo -n "#" > $3
+    cat header ${var}_filtered.txt >> $3
 
 #end raw]]></configfile>
   </configfiles>
@@ -97,7 +97,7 @@
 
 Wraps https://github.com/schmidda/blast-tools/tree/master as a Galaxy tool as a demonstration for Roberto Barrero
 
- 
+
 
 ------