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annotate rgclustal/test-data/rgClustal_testout.fasta @ 3:9c4d943fbef7 draft default tip

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author fubar
date Sun, 01 Dec 2013 20:07:58 -0500
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3
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1 >c_briggsae-chrII_+_
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2 ---ATGAGCTTCCACAAAAGCATGAGCTTT
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3 CTCAGCTTCTGCCACATCAGCATTCAAATG
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4 ATC
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5 >c_brenneri-Cbre_Contig60_+_
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6 ---ATGAGCCTCCACAACAGCATGATTTTT
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7 CTCGGCTTCCGCCACATCCGCATTCAAATG
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8 ATC
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9 >c_remanei-Crem_Contig172_-_
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10 ---ATGAGCCTCTACAACCGCATGATTCTT
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11 TTCAGCCTCTGCCACGTCCGCATTCAAATG
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12 CTC
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13 >c_elegans-II_+_
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14 ---ATGAGCCTCTACTACAGCATGATTCTT
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15 CTCAGCTTCTGCAACGTCAGCATTCAGATG
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16 ATC
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17 >c_briggsae-chrII_+_bar
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18 ---CCGGAGTCGATCCCTGAAT--------
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19 ------------------------------
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20 ---
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21 >c_brenneri-Cbre_Contig60fee_+_
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22 ---ACGAAGTCGATCCCTGAAA--------
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23 -TCAGATGAGCGGTTGACCA---GAGAACA
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24 ACC
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25 >c_remanei-Crem_Contig172zot_-_
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26 ---ACGAAGTCGGTCCCTATAAGGTATGAT
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27 TTTATATGA----TGTACCATAAGGAAATA
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28 GTC
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29 >c_elegans-II_+_meh
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30 ---ACGAAGTCGGTCCCTGAAC--AATTAT
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31 TT----TGA----TATA---GAAAGAAACG
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32 GTA
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33 >c_briggsae-chrIfooI_+_
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34 CGCACAAATATGATGCACAAATCCACAACC
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35 TAAAGCATCTCCGATAACGTTGACCGAAGT
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36 ---
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37 >c_brenneri-Cbre_Contig60gak_+_
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38 CGCACAAATGTAGTGGACAAATCCGCATCC
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39 CAAAGCGTCTCCGATAACATTTACCGAAGT
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40 ---
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41 >c_remanei-Crem_Contig172foo_-_
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42 AGCACAAATGTAATGAACGAATCCGCATCC
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43 CAACGCATCGCCAATCACATTCACAGATGT
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44 ---
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45 >c_elegans-II_+_more
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46 TGCACAAATGTGATGAACGAATCCACATCC
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47 CAATGCATCACCGATCACATTGACAGATGT
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48 ---