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From test toolshed - appears to install fine.
author fubar
date Sun, 01 Dec 2013 19:57:03 -0500
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<?xml version="1.0" encoding="UTF-8"?>
<tool_dependency>
    <package name="clustalw" version="2.1">
        <install version="1.0"> 
           <actions>
                <action type="download_by_url">http://www.clustal.org/download/current/clustalw-2.1.tar.gz</action>
                <action type="shell_command">./configure &amp;&amp; make</action>
                <action type="move_file"><source>src/clustalw2</source><destination>$INSTALL_DIR</destination></action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                </action>
           </actions>
        </install>
        <readme>Installs clustalw from http://www.clustal.org/download/current/clustalw-2.1.tar.gz
       </readme>
    </package>
</tool_dependency>