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planemo upload for repository https://github.com/ncbi/egapx commit 9e59da535540cb4d5c1c412bb2b0969744dfb0b0-dirty
author fubar
date Sun, 04 Aug 2024 02:30:36 +0000
parents a3b158471bd3
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1 CONTENTS
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3 Public Domain Notice
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4 Exceptions (for bundled 3rd-party code)
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5 Copyright F.A.Q.
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9 ================================================================================
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10 PUBLIC DOMAIN NOTICE
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11 National Center for Biotechnology Information
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13 This software was created as part of the author(s) official duties as a United
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14 States Government employee(s), is a "United States Government Work" and is not
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15 subject to copyright in the United States (17 USC 105). The National Library of
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16 Medicine (NLM) and the U.S. Government have not placed any restriction on its
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17 use or reproduction.
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19 The NLM disclaims all warranties, express or implied, including warranties of
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20 performance, merchantability, or fitness for any particular purpose.
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22 Please cite NLM in any work or product based on this material.
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24 EGAPx makes use of various third-party tools which carry their own licenses.
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26 The list of third-party tools and their licenses are provided here:
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27 ================================================================================
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28 EXCEPTIONS (in all cases excluding NCBI-written makefiles):
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31 Location: img/gp/third-party/STAR
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32 Authors: Alexander Dobin
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33 License: MIT License
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34 [https://github.com/alexdobin/STAR/blob/master/LICENSE]
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36 Location: img/gp/third-party/samtools
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37 Authors: Genome Research Ltd.
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38 License: The MIT/Expat License
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39 [https://github.com/samtools/samtools/blob/develop/LICENSE]
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41 Location: img/gp/third-party/miniprot
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42 Authors: Dana-Farber Cancer Institute
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43 License: MIT License
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44 [https://github.com/lh3/miniprot/blob/master/LICENSE.txt]
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46 Location: img/gp/third-party/diamond
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47 Authors: Benjamin Buchfink
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48 License: GNU GENERAL PUBLIC LICENSE
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49 [https://github.com/bbuchfink/diamond/blob/master/LICENSE]
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51 Location: img/gp/third-party/seqkit
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52 Authors: Wei Shen
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53 License: MIT License
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54 [https://github.com/shenwei356/seqkit/blob/master/LICENSE]
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56 ================================================================================
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58 Copyright F.A.Q.
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61 --------------------------------------------------------------
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62 Q. Our product makes use of the NCBI source code, and we did changes
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63 and additions to that version of the NCBI code to better fit it to
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64 our needs. Can we copyright the code, and how?
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66 A. You can copyright only the *changes* or the *additions* you made to the
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67 NCBI source code. You should identify unambiguously those sections of
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68 the code that were modified, e.g. by commenting any changes you made
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69 in the code you distribute. Therefore, your license has to make clear
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70 to users that your product is a combination of code that is public domain
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71 within the U.S. (but may be subject to copyright by the U.S. in foreign
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72 countries) and code that has been created or modified by you.
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75 --------------------------------------------------------------
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76 Q. Can we (re)license all or part of the NCBI source code?
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78 A. No, you cannot license or relicense the source code written by NCBI
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79 since you cannot claim any copyright in the software that was developed
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80 at NCBI as a 'government work' and consequently is in the public domain
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81 within the U.S.
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84 --------------------------------------------------------------
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85 Q. What if these copyright guidelines are not clear enough or are not
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86 applicable to my particular case?
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87
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88 A. Contact us. Send your questions to 'toolbox@ncbi.nlm.nih.gov'.
2
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90 MIT License
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92 Copyright (c) 2024 Ross Lazarus
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94 Permission is hereby granted, free of charge, to any person obtaining a copy
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95 of this software and associated documentation files (the "Software"), to deal
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96 in the Software without restriction, including without limitation the rights
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97 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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98 copies of the Software, and to permit persons to whom the Software is
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99 furnished to do so, subject to the following conditions:
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101 The above copyright notice and this permission notice shall be included in all
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102 copies or substantial portions of the Software.
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103
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104 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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105 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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106 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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107 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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108 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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109 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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110 SOFTWARE.