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planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4-dirty
author fubar
date Sat, 03 Aug 2024 12:10:13 +0000
parents d9c5c5b87fec
children a3b158471bd3
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1 CONTENTS
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3 Public Domain Notice
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4 Exceptions (for bundled 3rd-party code)
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5 Copyright F.A.Q.
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9 ================================================================================
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10 PUBLIC DOMAIN NOTICE
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11 National Center for Biotechnology Information
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13 This software was created as part of the author(s) official duties as a United
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14 States Government employee(s), is a "United States Government Work" and is not
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15 subject to copyright in the United States (17 USC 105). The National Library of
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16 Medicine (NLM) and the U.S. Government have not placed any restriction on its
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17 use or reproduction.
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19 The NLM disclaims all warranties, express or implied, including warranties of
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20 performance, merchantability, or fitness for any particular purpose.
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22 Please cite NLM in any work or product based on this material.
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24 EGAPx makes use of various third-party tools which carry their own licenses.
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26 The list of third-party tools and their licenses are provided here:
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27 ================================================================================
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28 EXCEPTIONS (in all cases excluding NCBI-written makefiles):
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31 Location: img/gp/third-party/STAR
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32 Authors: Alexander Dobin
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33 License: MIT License
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34 [https://github.com/alexdobin/STAR/blob/master/LICENSE]
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36 Location: img/gp/third-party/samtools
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37 Authors: Genome Research Ltd.
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38 License: The MIT/Expat License
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39 [https://github.com/samtools/samtools/blob/develop/LICENSE]
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41 Location: img/gp/third-party/miniprot
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42 Authors: Dana-Farber Cancer Institute
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43 License: MIT License
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44 [https://github.com/lh3/miniprot/blob/master/LICENSE.txt]
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46 Location: img/gp/third-party/diamond
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47 Authors: Benjamin Buchfink
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48 License: GNU GENERAL PUBLIC LICENSE
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49 [https://github.com/bbuchfink/diamond/blob/master/LICENSE]
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51 Location: img/gp/third-party/seqkit
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52 Authors: Wei Shen
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53 License: MIT License
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54 [https://github.com/shenwei356/seqkit/blob/master/LICENSE]
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56 ================================================================================
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58 Copyright F.A.Q.
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61 --------------------------------------------------------------
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62 Q. Our product makes use of the NCBI source code, and we did changes
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63 and additions to that version of the NCBI code to better fit it to
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64 our needs. Can we copyright the code, and how?
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66 A. You can copyright only the *changes* or the *additions* you made to the
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67 NCBI source code. You should identify unambiguously those sections of
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68 the code that were modified, e.g. by commenting any changes you made
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69 in the code you distribute. Therefore, your license has to make clear
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70 to users that your product is a combination of code that is public domain
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71 within the U.S. (but may be subject to copyright by the U.S. in foreign
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72 countries) and code that has been created or modified by you.
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75 --------------------------------------------------------------
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76 Q. Can we (re)license all or part of the NCBI source code?
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78 A. No, you cannot license or relicense the source code written by NCBI
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79 since you cannot claim any copyright in the software that was developed
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80 at NCBI as a 'government work' and consequently is in the public domain
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81 within the U.S.
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84 --------------------------------------------------------------
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85 Q. What if these copyright guidelines are not clear enough or are not
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86 applicable to my particular case?
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87
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88 A. Contact us. Send your questions to 'toolbox@ncbi.nlm.nih.gov'.