Mercurial > repos > fubar > egapx_runner
comparison ui/assets/config/executor/aws.config @ 0:d9c5c5b87fec draft
planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4
| author | fubar |
|---|---|
| date | Sat, 03 Aug 2024 11:16:53 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:d9c5c5b87fec |
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| 1 process { | |
| 2 executor = 'awsbatch' | |
| 3 // Queue points to a compute environment with a mix of r6i.2xlarge, r6i.4xlarge, and r6i.8xlarge | |
| 4 // with 200GB EBS gp3 disks, using modified Amazon Linux 2 image with aws cli and docker installed | |
| 5 // as described in https://www.nextflow.io/docs/latest/aws.html | |
| 6 queue = 'egapx-small-and-medium-ds' | |
| 7 // If jobs fail with the message 'out of disk space', create compute environment | |
| 8 // with r6i.4xlarge instances with 1000GB EBS gp3 disk, connect a queue to it | |
| 9 // and put the queue name here | |
| 10 withLabel: 'large_disk' { | |
| 11 queue = 'egapx-large-disk' | |
| 12 } | |
| 13 } | |
| 14 | |
| 15 aws { | |
| 16 region = 'us-east-2' | |
| 17 batch { | |
| 18 cliPath = '/home/ec2-user/miniconda/bin/aws' | |
| 19 maxTransferAttempts = 3 | |
| 20 } | |
| 21 client { | |
| 22 maxErrorRetry = 3 | |
| 23 socketTimeout = 3600000 // 1 hours in milliseconds | |
| 24 } | |
| 25 } |