--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ui/assets/config/executor/slurm.config	Sat Aug 03 11:16:53 2024 +0000
@@ -0,0 +1,37 @@
+// Config for typical SLURM cluster
+// Adjust the parameters for your cluster - queue name, temp dir, etc.
+// Use your temp space instead of /data/$USER in the following config
+
+singularity {
+    enabled = true
+    autoMounts = true
+    cacheDir = "/data/$USER/singularity"
+    envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOB_ID,SINGULARITY_BINDPATH'
+}
+
+env {
+    SINGULARITY_CACHEDIR="/data/$USER/singularity"
+    SINGULARITY_TMPDIR="/data/$USER/tmp"
+}
+
+process {
+    executor = 'slurm'
+    // Set other parameters specific to your cluser here
+    // maxRetries = 1
+    // queue = 'norm'
+    // queueSize = 200
+    // pollInterval = '2 min'
+    // queueStatInterval = '5 min'
+    // submitRateLimit = '6/1min'
+    // retry.maxAttempts = 1
+
+    // clusterOptions = ' --gres=lscratch:200 '
+
+    // scratch = '/lscratch/$SLURM_JOB_ID'
+    // with the default stageIn and stageOut settings using scratch can
+    // result in humungous work folders
+    // see https://github.com/nextflow-io/nextflow/issues/961 and
+    //     https://www.nextflow.io/docs/latest/process.html?highlight=stageinmode
+    //stageInMode = 'symlink'
+    //stageOutMode = 'rsync'
+}