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view ui/assets/config/executor/biowulf_local.config @ 2:a3b158471bd3 draft

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planemo upload for repository https://github.com/ncbi/egapx commit 98875ef7eda9323fc9991970103954e9097d9e73
author fubar
date Sun, 04 Aug 2024 00:06:43 +0000
parents d9c5c5b87fec
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// This is config for EGAPx run on a single node on Biowulf cluster
// The node should be started with --cpus-per-task=32 --mem=224g --time=1-00:00:00

singularity {
    enabled = true
    autoMounts = true
    cacheDir = "/data/$USER/singularity"
    envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOB_ID,SINGULARITY_BINDPATH'
}

env {
    SINGULARITY_CACHEDIR="/data/$USER/singularity"
}