Mercurial > repos > fubar > egapx_runner

view ui/assets/config/executor/biowulf_local.config @ 1:c8e1543546f8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ncbi/egapx commit 8173d01b08d9a91c9ec5f6cb50af346edc8020c4-dirty
author fubar
date Sat, 03 Aug 2024 12:10:13 +0000
parents d9c5c5b87fec
children
line wrap: on
line source

// This is config for EGAPx run on a single node on Biowulf cluster
// The node should be started with --cpus-per-task=32 --mem=224g --time=1-00:00:00

singularity {
    enabled = true
    autoMounts = true
    cacheDir = "/data/$USER/singularity"
    envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOB_ID,SINGULARITY_BINDPATH'
}

env {
    SINGULARITY_CACHEDIR="/data/$USER/singularity"
}