jbrowse2: x/static/js/3425.be85a6ad.chunk.js.map annotate

annotate x/static/js/3425.be85a6ad.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

author	fubar
date	Sat, 05 Oct 2024 23:58:05 +0000
parents
children

rev	line source
125 49f3d3878413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566 fubar parents: diff changeset	1 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React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { getSession } from '@jbrowse/core/util'\nimport { FileLocation, isSessionWithShareURL } from '@jbrowse/core/util/types'\nimport { ErrorMessage, FileSelector } from '@jbrowse/core/ui'\nimport {\n Accordion,\n AccordionSummary,\n AccordionDetails,\n Button,\n DialogContent,\n DialogActions,\n TextField,\n Typography,\n} from '@mui/material'\nimport { openLocation } from '@jbrowse/core/util/io'\nimport { Dialog, AssemblySelector } from '@jbrowse/core/ui'\nimport { makeStyles } from 'tss-react/mui'\n\n// icons\nimport ImportIcon from '@mui/icons-material/Publish'\nimport ExpandMoreIcon from '@mui/icons-material/ExpandMore'\n\n// locals\nimport { GridBookmarkModel } from '../../model'\nimport { fromUrlSafeB64 } from '../../utils'\nimport { readSessionFromDynamo } from '../../sessionSharing'\n\nconst useStyles = makeStyles()(theme => ({\n expandIcon: {\n color: theme.palette.tertiary.contrastText \|\| '#fff',\n },\n minWidth: {\n minWidth: 500,\n },\n}))\n\nasync function getBookmarksFromShareLink(shareLink: string, shareURL?: string) {\n const defaultURL = 'https://share.jbrowse.org/api/v1/'\n const urlParams = new URL(shareLink)\n const sessionQueryParam = urlParams.searchParams.get('bookmarks')\n const password = urlParams.searchParams.get('password')\n const decryptedSession = await readSessionFromDynamo(\n `${shareURL ?? defaultURL}load`,\n sessionQueryParam \|\| '',\n password \|\| '',\n )\n\n const sharedSession = JSON.parse(await fromUrlSafeB64(decryptedSession))\n return sharedSession.sharedBookmarks\n}\n\nfunction guessFileType(header: string) {\n return header.startsWith('chrom') && header.includes('assembly_name')\n ? 'TSV'\n : 'BED'\n}\n\nasync function getBookmarksFromTSVFile(lines: string[]) {\n if (lines[0]!.startsWith('chrom')) {\n lines = lines.slice(1)\n }\n\n return lines\n .filter(f => !f.startsWith('#'))\n .map(line => {\n const [refName, start, end, label, assemblyName] = line.split('\\t')\n return {\n assemblyName: assemblyName!,\n refName: refName!,\n start: +start!,\n end: +end!,\n label: label === '.' ? undefined : label,\n }\n })\n}\n\nasync function getBookmarksFromBEDFile(lines: string[], selectedAsm: string) {\n return lines\n .filter(f => !f.startsWith('#'))\n .map(line => {\n const [refName, start, end, label] = line.split('\\t')\n return {\n assemblyName: selectedAsm,\n refName: refName!,\n start: +start!,\n end: +end!,\n label: label === '.' ? undefined : label,\n }\n })\n}\n\nconst ImportBookmarksDialog = observer(function ({\n onClose,\n model,\n}: {\n onClose: () => void\n model: GridBookmarkModel\n}) {\n const { classes } = useStyles()\n const [location, setLocation] = useState<FileLocation>()\n const [error, setError] = useState<unknown>()\n const [shareLink, setShareLink] = useState('')\n const session = getSession(model)\n const { assemblyNames } = session\n const [selectedAsm, setSelectedAsm] = useState(assemblyNames[0]!)\n const [expanded, setExpanded] = useState<\n 'shareLinkAccordion' \| 'fileAccordion'\n >('shareLinkAccordion')\n\n return (\n <Dialog open onClose={onClose} maxWidth=\"xl\" title=\"Import bookmarks\">\n <DialogContent className={classes.minWidth}>\n <Accordion\n expanded={expanded === 'shareLinkAccordion'}\n onChange={() => {\n setExpanded('shareLinkAccordion')\n }}\n >\n <AccordionSummary\n expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}\n >\n <Typography\n style={{ display: 'flex', alignItems: 'center', gap: '5px' }}\n >\n Import from share link\n </Typography>\n </AccordionSummary>\n <AccordionDetails>\n <Typography>\n Paste a bookmark share link generated by the 'Share' button from\n the bookmarks widget\n </Typography>\n <TextField\n label=\"Enter Share URL\"\n variant=\"outlined\"\n fullWidth\n value={shareLink}\n onChange={e => {\n setShareLink(e.target.value)\n }}\n />\n </AccordionDetails>\n </Accordion>\n <Accordion\n expanded={expanded === 'fileAccordion'}\n onChange={() => {\n setExpanded('fileAccordion')\n }}\n >\n <AccordionSummary\n expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}\n >\n <Typography>Import from file</Typography>\n </AccordionSummary>\n <AccordionDetails>\n <FileSelector\n location={location}\n setLocation={setLocation}\n name=\"File\"\n description={`Choose a BED or TSV format file to import. Required TSV column headers are \"chrom, start, end, label, assembly_name\".`}\n />\n <AssemblySelector\n onChange={val => {\n setSelectedAsm(val)\n }}\n helperText={'Select the assembly for BED file.'}\n session={session}\n selected={selectedAsm}\n />\n </AccordionDetails>\n </Accordion>\n {error ? <ErrorMessage error={error} /> : null}\n </DialogContent>\n <DialogActions>\n <Button variant=\"contained\" color=\"secondary\" onClick={onClose}>\n Cancel\n </Button>\n <Button\n data-testid=\"dialogImport\"\n variant=\"contained\"\n color=\"primary\"\n disabled={!location && !shareLink}\n startIcon={<ImportIcon />}\n onClick={async () => {\n try {\n if (expanded === 'fileAccordion' && location) {\n const data = await openLocation(location).readFile('utf8')\n const lines = data.split(/\\n\|\\r\\n\|\\r/).filter(f => !!f.trim())\n const fileType = guessFileType(lines[0]!)\n if (fileType === 'BED') {\n model.importBookmarks(\n await getBookmarksFromBEDFile(lines, selectedAsm),\n )\n } else {\n // TSV\n model.importBookmarks(await getBookmarksFromTSVFile(lines))\n }\n } else if (\n expanded === 'shareLinkAccordion' &&\n shareLink &&\n isSessionWithShareURL(session)\n ) {\n model.importBookmarks(\n await getBookmarksFromShareLink(shareLink, session.shareURL),\n )\n }\n onClose()\n } catch (e) {\n console.error(e)\n setError(e)\n }\n }}\n >\n Import\n </Button>\n </DialogActions>\n </Dialog>\n )\n})\nexport default ImportBookmarksDialog\n","// duplicated from products/jbrowse-web/src/sessionSharing.ts ; could possibly be moved into a higher directory and shared between the two\nimport { toUrlSafeB64 } from './utils'\n\n// from https://stackoverflow.com/questions/1349404/\nfunction generateUID(length: number) {\n return window\n .btoa(\n [...window.crypto.getRandomValues(new Uint8Array(length * 2))]\n .map(b => String.fromCharCode(b))\n .join(''),\n )\n .replaceAll(/[+/]/g, '')\n .slice(0, length)\n}\n\nconst encrypt = async (text: string, password: string) => {\n const AES = await import('crypto-js/aes')\n return AES.encrypt(text, password).toString()\n}\n\nconst decrypt = async (text: string, password: string) => {\n const AES = await import('crypto-js/aes')\n const Utf8 = await import('crypto-js/enc-utf8')\n const bytes = AES.decrypt(text, password)\n return bytes.toString(Utf8)\n}\n\nfunction getErrorMsg(err: string) {\n try {\n const obj = JSON.parse(err)\n return obj.message\n } catch (e) {\n return err\n }\n}\n// writes the encrypted session, current datetime, and referer to DynamoDB\nexport async function shareSessionToDynamo(\n session: unknown,\n url: string,\n referer: string,\n) {\n const sess = await toUrlSafeB64(JSON.stringify(session))\n const password = generateUID(5)\n const encryptedSession = await encrypt(sess, password)\n\n const data = new FormData()\n data.append('session', encryptedSession)\n data.append('dateShared', `${Date.now()}`)\n data.append('referer', referer)\n\n const response = await fetch(`${url}share`, {\n method: 'POST',\n mode: 'cors',\n body: data,\n })\n\n if (!response.ok) {\n const err = await response.text()\n throw new Error(getErrorMsg(err))\n }\n const json = await response.json()\n return {\n json,\n encryptedSession,\n password,\n }\n}\n\nexport async function readSessionFromDynamo(\n baseUrl: string,\n sessionQueryParam: string,\n password: string,\n signal?: AbortSignal,\n) {\n const sessionId = sessionQueryParam.split('share-')[1]!\n const url = `${baseUrl}?sessionId=${encodeURIComponent(sessionId)}`\n const response = await fetch(url, {\n signal,\n })\n\n if (!response.ok) {\n const err = await response.text()\n throw new Error(getErrorMsg(err))\n }\n\n const json = await response.json()\n return decrypt(json.session, password)\n}\n","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /#__PURE__/_jsx(\"path\", {\n d: \"M16.59 8.59 12 13.17 7.41 8.59 6 10l6 6 6-6z\"\n}), 'ExpandMore');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getAccordionDetailsUtilityClass } from \"./accordionDetailsClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getAccordionDetailsUtilityClass, classes);\n};\nconst AccordionDetailsRoot = styled('div', {\n name: 'MuiAccordionDetails',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => ({\n padding: theme.spacing(1, 2, 2)\n})));\nconst AccordionDetails = /#__PURE__/React.forwardRef(function AccordionDetails(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAccordionDetails'\n });\n const {\n className,\n ...other\n } = props;\n const ownerState = props;\n const classes = useUtilityClasses(ownerState);\n return /#__PURE__/_jsx(AccordionDetailsRoot, {\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? AccordionDetails.propTypes /* remove-proptypes / = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /\n The content of the component.\n /\n children: PropTypes.node,\n /\n Override or extend the styles applied to the component.\n /\n classes: PropTypes.object,\n /\n @ignore\n /\n className: PropTypes.string,\n /\n The system prop that allows defining system overrides as well as additional CSS styles.\n /\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default AccordionDetails;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAccordionDetailsUtilityClass(slot) {\n return generateUtilityClass('MuiAccordionDetails', slot);\n}\nconst accordionDetailsClasses = generateUtilityClasses('MuiAccordionDetails', ['root']);\nexport default accordionDetailsClasses;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAccordionSummaryUtilityClass(slot) {\n return generateUtilityClass('MuiAccordionSummary', slot);\n}\nconst accordionSummaryClasses = generateUtilityClasses('MuiAccordionSummary', ['root', 'expanded', 'focusVisible', 'disabled', 'gutters', 'contentGutters', 'content', 'expandIconWrapper']);\nexport default accordionSummaryClasses;","'use client';\n\nimport as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport AccordionContext from \"../Accordion/AccordionContext.js\";\nimport accordionSummaryClasses, { getAccordionSummaryUtilityClass } from \"./accordionSummaryClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n expanded,\n disabled,\n disableGutters\n } = ownerState;\n const slots = {\n root: ['root', expanded && 'expanded', disabled && 'disabled', !disableGutters && 'gutters'],\n focusVisible: ['focusVisible'],\n content: ['content', expanded && 'expanded', !disableGutters && 'contentGutters'],\n expandIconWrapper: ['expandIconWrapper', expanded && 'expanded']\n };\n return composeClasses(slots, getAccordionSummaryUtilityClass, classes);\n};\nconst AccordionSummaryRoot = styled(ButtonBase, {\n name: 'MuiAccordionSummary',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => {\n const transition = {\n duration: theme.transitions.duration.shortest\n };\n return {\n display: 'flex',\n minHeight: 48,\n padding: theme.spacing(0, 2),\n transition: theme.transitions.create(['min-height', 'background-color'], transition),\n [`&.${accordionSummaryClasses.focusVisible}`]: {\n backgroundColor: (theme.vars \|\| theme).palette.action.focus\n },\n [`&.${accordionSummaryClasses.disabled}`]: {\n opacity: (theme.vars \|\| theme).palette.action.disabledOpacity\n },\n [`&:hover:not(.${accordionSummaryClasses.disabled})`]: {\n cursor: 'pointer'\n },\n variants: [{\n props: props => !props.disableGutters,\n style: {\n [`&.${accordionSummaryClasses.expanded}`]: {\n minHeight: 64\n }\n }\n }]\n };\n}));\nconst AccordionSummaryContent = styled('div', {\n name: 'MuiAccordionSummary',\n slot: 'Content',\n overridesResolver: (props, styles) => styles.content\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexGrow: 1,\n margin: '12px 0',\n variants: [{\n props: props => !props.disableGutters,\n style: {\n transition: theme.transitions.create(['margin'], {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${accordionSummaryClasses.expanded}`]: {\n margin: '20px 0'\n }\n }\n }]\n})));\nconst AccordionSummaryExpandIconWrapper = styled('div', {\n name: 'MuiAccordionSummary',\n slot: 'ExpandIconWrapper',\n overridesResolver: (props, styles) => styles.expandIconWrapper\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n color: (theme.vars \|\| theme).palette.action.active,\n transform: 'rotate(0deg)',\n transition: theme.transitions.create('transform', {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${accordionSummaryClasses.expanded}`]: {\n transform: 'rotate(180deg)'\n }\n})));\nconst AccordionSummary = /#__PURE__/React.forwardRef(function AccordionSummary(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAccordionSummary'\n });\n const {\n children,\n className,\n expandIcon,\n focusVisibleClassName,\n onClick,\n ...other\n } = props;\n const {\n disabled = false,\n disableGutters,\n expanded,\n toggle\n } = React.useContext(AccordionContext);\n const handleChange = event => {\n if (toggle) {\n toggle(event);\n }\n if (onClick) {\n onClick(event);\n }\n };\n const ownerState = {\n ...props,\n expanded,\n disabled,\n disableGutters\n };\n const classes = useUtilityClasses(ownerState);\n return /#__PURE__/_jsxs(AccordionSummaryRoot, {\n focusRipple: false,\n disableRipple: true,\n disabled: disabled,\n component: \"div\",\n \"aria-expanded\": expanded,\n className: clsx(classes.root, className),\n focusVisibleClassName: clsx(classes.focusVisible, focusVisibleClassName),\n onClick: handleChange,\n ref: ref,\n ownerState: ownerState,\n ...other,\n children: [/#__PURE__/_jsx(AccordionSummaryContent, {\n className: classes.content,\n ownerState: ownerState,\n children: children\n }), expandIcon && /#__PURE__/_jsx(AccordionSummaryExpandIconWrapper, {\n className: classes.expandIconWrapper,\n ownerState: ownerState,\n children: expandIcon\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? AccordionSummary.propTypes /* remove-proptypes / = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /\n The content of the component.\n /\n children: PropTypes.node,\n /\n Override or extend the styles applied to the component.\n /\n classes: PropTypes.object,\n /\n @ignore\n /\n className: PropTypes.string,\n /\n The icon to display as the expand indicator.\n /\n expandIcon: PropTypes.node,\n /\n This prop can help identify which element has keyboard focus.\n * The class name will be applied when the element gains the focus through keyboard interaction.\n * It's a polyfill for the [CSS :focus-visible selector](https://drafts.csswg.org/selectors-4/#the-focus-visible-pseudo).\n * The rationale for using this feature [is explained here](https://github.com/WICG/focus-visible/blob/HEAD/explainer.md).\n * A [polyfill can be used](https://github.com/WICG/focus-visible) to apply a `focus-visible` class to other components\n * if needed.\n /\n focusVisibleClassName: PropTypes.string,\n /\n @ignore\n /\n onClick: PropTypes.func,\n /\n The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default AccordionSummary;"],"names":["useStyles","makeStyles","theme","expandIcon","color","palette","tertiary","contrastText","minWidth","observer","onClose","model","classes","location","setLocation","useState","error","setError","shareLink","setShareLink","session","getSession","assemblyNames","selectedAsm","setSelectedAsm","expanded","setExpanded","React","Dialog","open","maxWidth","title","DialogContent","className","Accordion","onChange","AccordionSummary","ExpandMoreIcon","Typography","style","display","alignItems","gap","AccordionDetails","TextField","label","variant","fullWidth","value","e","target","FileSelector","name","description","AssemblySelector","val","helperText","selected","ErrorMessage","DialogActions","Button","onClick","disabled","startIcon","ImportIcon","async","lines","openLocation","readFile","split","filter","f","trim","header","startsWith","includes","importBookmarks","map","line","refName","start","end","assemblyName","undefined","getBookmarksFromBEDFile","slice","getBookmarksFromTSVFile","isSessionWithShareURL","shareURL","urlParams","URL","sessionQueryParam","searchParams","get","password","decryptedSession","readSessionFromDynamo","JSON","parse","fromUrlSafeB64","sharedBookmarks","getBookmarksFromShareLink","console","encrypt","text","toString","decrypt","AES","Utf8","getErrorMsg","err","message","shareSessionToDynamo","url","referer","sess","toUrlSafeB64","stringify","window","btoa","crypto","getRandomValues","Uint8Array","length","b","String","fromCharCode","join","replaceAll","encryptedSession","data","FormData","append","Date","now","response","fetch","method","mode","body","ok","Error","json","baseUrl","signal","sessionId","encodeURIComponent","d","AccordionDetailsRoot","slot","overridesResolver","props","styles","root","padding","spacing","inProps","ref","other","ownerState","useUtilityClasses","getAccordionDetailsUtilityClass","getAccordionSummaryUtilityClass","generateUtilityClass","generateUtilityClasses","AccordionSummaryRoot","styled","ButtonBase","memoTheme","transition","duration","transitions","shortest","minHeight","create","focusVisible","backgroundColor","vars","action","focus","opacity","disabledOpacity","cursor","variants","disableGutters","AccordionSummaryContent","content","flexGrow","margin","AccordionSummaryExpandIconWrapper","expandIconWrapper","active","transform","children","focusVisibleClassName","toggle","AccordionContext","A","slots","composeClasses","focusRipple","disableRipple","component","clsx","event"],"sourceRoot":""}

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49f3d3878413 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

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React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { getSession } from '@jbrowse/core/util'\nimport { FileLocation, isSessionWithShareURL } from '@jbrowse/core/util/types'\nimport { ErrorMessage, FileSelector } from '@jbrowse/core/ui'\nimport {\n Accordion,\n AccordionSummary,\n AccordionDetails,\n Button,\n DialogContent,\n DialogActions,\n TextField,\n Typography,\n} from '@mui/material'\nimport { openLocation } from '@jbrowse/core/util/io'\nimport { Dialog, AssemblySelector } from '@jbrowse/core/ui'\nimport { makeStyles } from 'tss-react/mui'\n\n// icons\nimport ImportIcon from '@mui/icons-material/Publish'\nimport ExpandMoreIcon from '@mui/icons-material/ExpandMore'\n\n// locals\nimport { GridBookmarkModel } from '../../model'\nimport { fromUrlSafeB64 } from '../../utils'\nimport { readSessionFromDynamo } from '../../sessionSharing'\n\nconst useStyles = makeStyles()(theme => ({\n expandIcon: {\n color: theme.palette.tertiary.contrastText || '#fff',\n },\n minWidth: {\n minWidth: 500,\n },\n}))\n\nasync function getBookmarksFromShareLink(shareLink: string, shareURL?: string) {\n const defaultURL = 'https://share.jbrowse.org/api/v1/'\n const urlParams = new URL(shareLink)\n const sessionQueryParam = urlParams.searchParams.get('bookmarks')\n const password = urlParams.searchParams.get('password')\n const decryptedSession = await readSessionFromDynamo(\n `${shareURL ?? defaultURL}load`,\n sessionQueryParam || '',\n password || '',\n )\n\n const sharedSession = JSON.parse(await fromUrlSafeB64(decryptedSession))\n return sharedSession.sharedBookmarks\n}\n\nfunction guessFileType(header: string) {\n return header.startsWith('chrom') && header.includes('assembly_name')\n ? 'TSV'\n : 'BED'\n}\n\nasync function getBookmarksFromTSVFile(lines: string[]) {\n if (lines[0]!.startsWith('chrom')) {\n lines = lines.slice(1)\n }\n\n return lines\n .filter(f => !f.startsWith('#'))\n .map(line => {\n const [refName, start, end, label, assemblyName] = line.split('\\t')\n return {\n assemblyName: assemblyName!,\n refName: refName!,\n start: +start!,\n end: +end!,\n label: label === '.' ? undefined : label,\n }\n })\n}\n\nasync function getBookmarksFromBEDFile(lines: string[], selectedAsm: string) {\n return lines\n .filter(f => !f.startsWith('#'))\n .map(line => {\n const [refName, start, end, label] = line.split('\\t')\n return {\n assemblyName: selectedAsm,\n refName: refName!,\n start: +start!,\n end: +end!,\n label: label === '.' ? undefined : label,\n }\n })\n}\n\nconst ImportBookmarksDialog = observer(function ({\n onClose,\n model,\n}: {\n onClose: () => void\n model: GridBookmarkModel\n}) {\n const { classes } = useStyles()\n const [location, setLocation] = useState<FileLocation>()\n const [error, setError] = useState<unknown>()\n const [shareLink, setShareLink] = useState('')\n const session = getSession(model)\n const { assemblyNames } = session\n const [selectedAsm, setSelectedAsm] = useState(assemblyNames[0]!)\n const [expanded, setExpanded] = useState<\n 'shareLinkAccordion' | 'fileAccordion'\n >('shareLinkAccordion')\n\n return (\n <Dialog open onClose={onClose} maxWidth=\"xl\" title=\"Import bookmarks\">\n <DialogContent className={classes.minWidth}>\n <Accordion\n expanded={expanded === 'shareLinkAccordion'}\n onChange={() => {\n setExpanded('shareLinkAccordion')\n }}\n >\n <AccordionSummary\n expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}\n >\n <Typography\n style={{ display: 'flex', alignItems: 'center', gap: '5px' }}\n >\n Import from share link\n </Typography>\n </AccordionSummary>\n <AccordionDetails>\n <Typography>\n Paste a bookmark share link generated by the 'Share' button from\n the bookmarks widget\n </Typography>\n <TextField\n label=\"Enter Share URL\"\n variant=\"outlined\"\n fullWidth\n value={shareLink}\n onChange={e => {\n setShareLink(e.target.value)\n }}\n />\n </AccordionDetails>\n </Accordion>\n <Accordion\n expanded={expanded === 'fileAccordion'}\n onChange={() => {\n setExpanded('fileAccordion')\n }}\n >\n <AccordionSummary\n expandIcon={<ExpandMoreIcon className={classes.expandIcon} />}\n >\n <Typography>Import from file</Typography>\n </AccordionSummary>\n <AccordionDetails>\n <FileSelector\n location={location}\n setLocation={setLocation}\n name=\"File\"\n description={`Choose a BED or TSV format file to import. Required TSV column headers are \"chrom, start, end, label, assembly_name\".`}\n />\n <AssemblySelector\n onChange={val => {\n setSelectedAsm(val)\n }}\n helperText={'Select the assembly for BED file.'}\n session={session}\n selected={selectedAsm}\n />\n </AccordionDetails>\n </Accordion>\n {error ? <ErrorMessage error={error} /> : null}\n </DialogContent>\n <DialogActions>\n <Button variant=\"contained\" color=\"secondary\" onClick={onClose}>\n Cancel\n </Button>\n <Button\n data-testid=\"dialogImport\"\n variant=\"contained\"\n color=\"primary\"\n disabled={!location && !shareLink}\n startIcon={<ImportIcon />}\n onClick={async () => {\n try {\n if (expanded === 'fileAccordion' && location) {\n const data = await openLocation(location).readFile('utf8')\n const lines = data.split(/\\n|\\r\\n|\\r/).filter(f => !!f.trim())\n const fileType = guessFileType(lines[0]!)\n if (fileType === 'BED') {\n model.importBookmarks(\n await getBookmarksFromBEDFile(lines, selectedAsm),\n )\n } else {\n // TSV\n model.importBookmarks(await getBookmarksFromTSVFile(lines))\n }\n } else if (\n expanded === 'shareLinkAccordion' &&\n shareLink &&\n isSessionWithShareURL(session)\n ) {\n model.importBookmarks(\n await getBookmarksFromShareLink(shareLink, session.shareURL),\n )\n }\n onClose()\n } catch (e) {\n console.error(e)\n setError(e)\n }\n }}\n >\n Import\n </Button>\n </DialogActions>\n </Dialog>\n )\n})\nexport default ImportBookmarksDialog\n","// duplicated from products/jbrowse-web/src/sessionSharing.ts ; could possibly be moved into a higher directory and shared between the two\nimport { toUrlSafeB64 } from './utils'\n\n// from https://stackoverflow.com/questions/1349404/\nfunction generateUID(length: number) {\n return window\n .btoa(\n [...window.crypto.getRandomValues(new Uint8Array(length * 2))]\n .map(b => String.fromCharCode(b))\n .join(''),\n )\n .replaceAll(/[+/]/g, '')\n .slice(0, length)\n}\n\nconst encrypt = async (text: string, password: string) => {\n const AES = await import('crypto-js/aes')\n return AES.encrypt(text, password).toString()\n}\n\nconst decrypt = async (text: string, password: string) => {\n const AES = await import('crypto-js/aes')\n const Utf8 = await import('crypto-js/enc-utf8')\n const bytes = AES.decrypt(text, password)\n return bytes.toString(Utf8)\n}\n\nfunction getErrorMsg(err: string) {\n try {\n const obj = JSON.parse(err)\n return obj.message\n } catch (e) {\n return err\n }\n}\n// writes the encrypted session, current datetime, and referer to DynamoDB\nexport async function shareSessionToDynamo(\n session: unknown,\n url: string,\n referer: string,\n) {\n const sess = await toUrlSafeB64(JSON.stringify(session))\n const password = generateUID(5)\n const encryptedSession = await encrypt(sess, password)\n\n const data = new FormData()\n data.append('session', encryptedSession)\n data.append('dateShared', `${Date.now()}`)\n data.append('referer', referer)\n\n const response = await fetch(`${url}share`, {\n method: 'POST',\n mode: 'cors',\n body: data,\n })\n\n if (!response.ok) {\n const err = await response.text()\n throw new Error(getErrorMsg(err))\n }\n const json = await response.json()\n return {\n json,\n encryptedSession,\n password,\n }\n}\n\nexport async function readSessionFromDynamo(\n baseUrl: string,\n sessionQueryParam: string,\n password: string,\n signal?: AbortSignal,\n) {\n const sessionId = sessionQueryParam.split('share-')[1]!\n const url = `${baseUrl}?sessionId=${encodeURIComponent(sessionId)}`\n const response = await fetch(url, {\n signal,\n })\n\n if (!response.ok) {\n const err = await response.text()\n throw new Error(getErrorMsg(err))\n }\n\n const json = await response.json()\n return decrypt(json.session, password)\n}\n","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M16.59 8.59 12 13.17 7.41 8.59 6 10l6 6 6-6z\"\n}), 'ExpandMore');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getAccordionDetailsUtilityClass } from \"./accordionDetailsClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getAccordionDetailsUtilityClass, classes);\n};\nconst AccordionDetailsRoot = styled('div', {\n name: 'MuiAccordionDetails',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => ({\n padding: theme.spacing(1, 2, 2)\n})));\nconst AccordionDetails = /*#__PURE__*/React.forwardRef(function AccordionDetails(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAccordionDetails'\n });\n const {\n className,\n ...other\n } = props;\n const ownerState = props;\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(AccordionDetailsRoot, {\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? AccordionDetails.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default AccordionDetails;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAccordionDetailsUtilityClass(slot) {\n return generateUtilityClass('MuiAccordionDetails', slot);\n}\nconst accordionDetailsClasses = generateUtilityClasses('MuiAccordionDetails', ['root']);\nexport default accordionDetailsClasses;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAccordionSummaryUtilityClass(slot) {\n return generateUtilityClass('MuiAccordionSummary', slot);\n}\nconst accordionSummaryClasses = generateUtilityClasses('MuiAccordionSummary', ['root', 'expanded', 'focusVisible', 'disabled', 'gutters', 'contentGutters', 'content', 'expandIconWrapper']);\nexport default accordionSummaryClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport AccordionContext from \"../Accordion/AccordionContext.js\";\nimport accordionSummaryClasses, { getAccordionSummaryUtilityClass } from \"./accordionSummaryClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n expanded,\n disabled,\n disableGutters\n } = ownerState;\n const slots = {\n root: ['root', expanded && 'expanded', disabled && 'disabled', !disableGutters && 'gutters'],\n focusVisible: ['focusVisible'],\n content: ['content', expanded && 'expanded', !disableGutters && 'contentGutters'],\n expandIconWrapper: ['expandIconWrapper', expanded && 'expanded']\n };\n return composeClasses(slots, getAccordionSummaryUtilityClass, classes);\n};\nconst AccordionSummaryRoot = styled(ButtonBase, {\n name: 'MuiAccordionSummary',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => {\n const transition = {\n duration: theme.transitions.duration.shortest\n };\n return {\n display: 'flex',\n minHeight: 48,\n padding: theme.spacing(0, 2),\n transition: theme.transitions.create(['min-height', 'background-color'], transition),\n [`&.${accordionSummaryClasses.focusVisible}`]: {\n backgroundColor: (theme.vars || theme).palette.action.focus\n },\n [`&.${accordionSummaryClasses.disabled}`]: {\n opacity: (theme.vars || theme).palette.action.disabledOpacity\n },\n [`&:hover:not(.${accordionSummaryClasses.disabled})`]: {\n cursor: 'pointer'\n },\n variants: [{\n props: props => !props.disableGutters,\n style: {\n [`&.${accordionSummaryClasses.expanded}`]: {\n minHeight: 64\n }\n }\n }]\n };\n}));\nconst AccordionSummaryContent = styled('div', {\n name: 'MuiAccordionSummary',\n slot: 'Content',\n overridesResolver: (props, styles) => styles.content\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexGrow: 1,\n margin: '12px 0',\n variants: [{\n props: props => !props.disableGutters,\n style: {\n transition: theme.transitions.create(['margin'], {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${accordionSummaryClasses.expanded}`]: {\n margin: '20px 0'\n }\n }\n }]\n})));\nconst AccordionSummaryExpandIconWrapper = styled('div', {\n name: 'MuiAccordionSummary',\n slot: 'ExpandIconWrapper',\n overridesResolver: (props, styles) => styles.expandIconWrapper\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n color: (theme.vars || theme).palette.action.active,\n transform: 'rotate(0deg)',\n transition: theme.transitions.create('transform', {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${accordionSummaryClasses.expanded}`]: {\n transform: 'rotate(180deg)'\n }\n})));\nconst AccordionSummary = /*#__PURE__*/React.forwardRef(function AccordionSummary(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAccordionSummary'\n });\n const {\n children,\n className,\n expandIcon,\n focusVisibleClassName,\n onClick,\n ...other\n } = props;\n const {\n disabled = false,\n disableGutters,\n expanded,\n toggle\n } = React.useContext(AccordionContext);\n const handleChange = event => {\n if (toggle) {\n toggle(event);\n }\n if (onClick) {\n onClick(event);\n }\n };\n const ownerState = {\n ...props,\n expanded,\n disabled,\n disableGutters\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsxs(AccordionSummaryRoot, {\n focusRipple: false,\n disableRipple: true,\n disabled: disabled,\n component: \"div\",\n \"aria-expanded\": expanded,\n className: clsx(classes.root, className),\n focusVisibleClassName: clsx(classes.focusVisible, focusVisibleClassName),\n onClick: handleChange,\n ref: ref,\n ownerState: ownerState,\n ...other,\n children: [/*#__PURE__*/_jsx(AccordionSummaryContent, {\n className: classes.content,\n ownerState: ownerState,\n children: children\n }), expandIcon && /*#__PURE__*/_jsx(AccordionSummaryExpandIconWrapper, {\n className: classes.expandIconWrapper,\n ownerState: ownerState,\n children: expandIcon\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? AccordionSummary.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The icon to display as the expand indicator.\n */\n expandIcon: PropTypes.node,\n /**\n * This prop can help identify which element has keyboard focus.\n * The class name will be applied when the element gains the focus through keyboard interaction.\n * It's a polyfill for the [CSS :focus-visible selector](https://drafts.csswg.org/selectors-4/#the-focus-visible-pseudo).\n * The rationale for using this feature [is explained here](https://github.com/WICG/focus-visible/blob/HEAD/explainer.md).\n * A [polyfill can be used](https://github.com/WICG/focus-visible) to apply a `focus-visible` class to other components\n * if needed.\n */\n focusVisibleClassName: PropTypes.string,\n /**\n * @ignore\n */\n onClick: PropTypes.func,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default AccordionSummary;"],"names":["useStyles","makeStyles","theme","expandIcon","color","palette","tertiary","contrastText","minWidth","observer","onClose","model","classes","location","setLocation","useState","error","setError","shareLink","setShareLink","session","getSession","assemblyNames","selectedAsm","setSelectedAsm","expanded","setExpanded","React","Dialog","open","maxWidth","title","DialogContent","className","Accordion","onChange","AccordionSummary","ExpandMoreIcon","Typography","style","display","alignItems","gap","AccordionDetails","TextField","label","variant","fullWidth","value","e","target","FileSelector","name","description","AssemblySelector","val","helperText","selected","ErrorMessage","DialogActions","Button","onClick","disabled","startIcon","ImportIcon","async","lines","openLocation","readFile","split","filter","f","trim","header","startsWith","includes","importBookmarks","map","line","refName","start","end","assemblyName","undefined","getBookmarksFromBEDFile","slice","getBookmarksFromTSVFile","isSessionWithShareURL","shareURL","urlParams","URL","sessionQueryParam","searchParams","get","password","decryptedSession","readSessionFromDynamo","JSON","parse","fromUrlSafeB64","sharedBookmarks","getBookmarksFromShareLink","console","encrypt","text","toString","decrypt","AES","Utf8","getErrorMsg","err","message","shareSessionToDynamo","url","referer","sess","toUrlSafeB64","stringify","window","btoa","crypto","getRandomValues","Uint8Array","length","b","String","fromCharCode","join","replaceAll","encryptedSession","data","FormData","append","Date","now","response","fetch","method","mode","body","ok","Error","json","baseUrl","signal","sessionId","encodeURIComponent","d","AccordionDetailsRoot","slot","overridesResolver","props","styles","root","padding","spacing","inProps","ref","other","ownerState","useUtilityClasses","getAccordionDetailsUtilityClass","getAccordionSummaryUtilityClass","generateUtilityClass","generateUtilityClasses","AccordionSummaryRoot","styled","ButtonBase","memoTheme","transition","duration","transitions","shortest","minHeight","create","focusVisible","backgroundColor","vars","action","focus","opacity","disabledOpacity","cursor","variants","disableGutters","AccordionSummaryContent","content","flexGrow","margin","AccordionSummaryExpandIconWrapper","expandIconWrapper","active","transform","children","focusVisibleClassName","toggle","AccordionContext","A","slots","composeClasses","focusRipple","disableRipple","component","clsx","event"],"sourceRoot":""}

Mercurial > repos > fubar > jbrowse2

annotate x/static/js/3425.be85a6ad.chunk.js.map @ 125:49f3d3878413 draft