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comparison jbrowse2.xml @ 124:137e08517410 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit a9124072bc71dd670ee58ff8e4846e14d6d603ec-dirty
author fubar
date Fri, 04 Oct 2024 23:32:20 +0000
parents ae07c55ab96b
children 49f3d3878413
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123:160f33c6ba85 124:137e08517410
14 <include path="convertMAF.sh"/> 14 <include path="convertMAF.sh"/>
15 <include path="gff3_rebase.py"/> 15 <include path="gff3_rebase.py"/>
16 <include path="jb2_webserver.py"/> 16 <include path="jb2_webserver.py"/>
17 <include path="jbrowse2.py"/> 17 <include path="jbrowse2.py"/>
18 <include path="maf2bed.py"/> 18 <include path="maf2bed.py"/>
19 <include path="bedscoreplugin.js"/>
19 </required_files> 20 </required_files>
20 <version_command>python '${__tool_directory__}/jbrowse2.py' --version</version_command> 21 <version_command>python '${__tool_directory__}/jbrowse2.py' --version</version_command>
21 <command detect_errors="aggressive"><![CDATA[ 22 <command detect_errors="aggressive"><![CDATA[
22 mkdir -p '$output.files_path' && 23 mkdir -p '$output.files_path' &&
23 cp '$trackxml' '$output.files_path/galaxy.xml' && 24 cp '$trackxml' '$output.files_path/galaxy.xml' &&