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comparison test-data/blastxml/test.xml @ 3:2de9f585505b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
author fubar
date Tue, 09 Jan 2024 02:35:52 +0000
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2:37b2c26c7b9b 3:2de9f585505b
1 <?xml version="1.0"?>
2 <root>
3 <metadata>
4 <genomes>
5 <genome>test-data/merlin.fa</genome>
6 </genomes>
7 <general>
8 <defaultLocation></defaultLocation>
9 <trackPadding>40</trackPadding>
10 <shareLink>true</shareLink>
11 <aboutDescription></aboutDescription>
12 <show_tracklist>true</show_tracklist>
13 <show_nav>true</show_nav>
14 <show_overview>false</show_overview>
15 <show_menu>true</show_menu>
16 <hideGenomeOptions>false</hideGenomeOptions>
17 </general>
18 </metadata>
19 <tracks>
20 <track cat="Blah" format="blast">
21 <files>
22 <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP"/>
23 </files>
24
25 <options>
26 <style>
27 <className>feature</className>
28 <description></description>
29 <label>Description</label>
30 <height>400px</height>
31 </style>
32 <blast>
33 <parent>test-data/blastxml/merlin.gff</parent>
34 <protein>true</protein>
35 <min_gap>10</min_gap>
36 </blast>
37 <scaling>
38 <method>score</method>
39 <algo>blast</algo>
40 <scales>
41 <type>__auto__</type>
42 </scales>
43 <scheme>
44 <type>opacity</type>
45 <color>__auto__</color>
46 </scheme>
47 </scaling>
48 </options>
49 </track>
50 <track cat="Blah" format="blast">
51 <files>
52 <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP, min_gap=3"/>
53 </files>
54
55 <options>
56 <style>
57 <className>feature</className>
58 <description></description>
59 <label>Description</label>
60 <height>400px</height>
61 </style>
62 <blast>
63 <parent>test-data/blastxml/merlin.gff</parent>
64 <protein>true</protein>
65 <min_gap>3</min_gap>
66 </blast>
67 <scaling>
68 <method>score</method>
69 <algo>blast</algo>
70 <scales>
71 <type>__auto__</type>
72 </scales>
73 <scheme>
74 <type>opacity</type>
75 <color>__auto__</color>
76 </scheme>
77 </scaling>
78 </options>
79 </track>
80
81 <track cat="Blah" format="blast">
82 <files>
83 <trackFile path="test-data/blastxml/blast-gene1.xml" ext="blastxml" label="Non protein match/matchpart"/>
84 </files>
85
86 <options>
87 <style>
88 <className>feature</className>
89 <description></description>
90 <label>Description</label>
91 <height>400px</height>
92 </style>
93 <blast>
94 <parent>test-data/blastxml/merlin.gff</parent>
95 <min_gap>3</min_gap>
96 </blast>
97 <scaling>
98 <method>ignore</method>
99 <algo>linear</algo>
100 <scheme>
101 <type>opacity</type>
102 <color>__auto__</color>
103 </scheme>
104 </scaling>
105 </options>
106 </track>
107
108 <track cat="Blah" format="blast">
109 <files>
110 <trackFile path="test-data/blastxml/blastn-gene1.xml" ext="blastxml" label="Non protein match/matchpart, no parent"/>
111 </files>
112
113 <options>
114 <style>
115 <className>feature</className>
116 <description></description>
117 <label>Description</label>
118 <height>400px</height>
119 </style>
120 <blast>
121 <min_gap>40</min_gap>
122 </blast>
123 <scaling>
124 <method>score</method>
125 <algo>blast</algo>
126 <scales>
127 <type>__auto__</type>
128 </scales>
129 <scheme>
130 <type>opacity</type>
131 <color>__auto__</color>
132 </scheme>
133 </scaling>
134 </options>
135 </track>
136
137 </tracks>
138 </root>