Mercurial > repos > fubar > jbrowse2

comparison x/conda_build.sh @ 125:49f3d3878413 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author fubar
date Sat, 05 Oct 2024 23:58:05 +0000
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124:137e08517410 125:49f3d3878413
1 if [ -z ${CONDA_BUILD+x} ]; then
2 source /opt/conda/conda-bld/jbrowse2_1726856947541/work/build_env_setup.sh
3 fi
4 #!/bin/bash
5
6 # Place the jbrowse2 www content in the conda package
7 mkdir -p $PREFIX/opt/jbrowse2/
8 cp -r * $PREFIX/opt/jbrowse2/
9
10 # Set an env var for people willing to find the jbrowse2 www content
11 mkdir -p $PREFIX/etc/conda/activate.d/
12 echo "export JBROWSE2_SOURCE_DIR=$PREFIX/opt/jbrowse2" > $PREFIX/etc/conda/activate.d/jbrowse2-sourcedir.sh
13 chmod a+x $PREFIX/etc/conda/activate.d/jbrowse2-sourcedir.sh
14
15 mkdir -p $PREFIX/etc/conda/deactivate.d/
16 echo "unset JBROWSE2_SOURCE_DIR" > $PREFIX/etc/conda/deactivate.d/jbrowse2-sourcedir.sh
17 chmod a+x $PREFIX/etc/conda/deactivate.d/jbrowse2-sourcedir.sh
18
19 # Install the CLI
20 npm install --prefix=${PREFIX} -g @jbrowse/cli@${PKG_VERSION}