jbrowse2: x/static/js/491.0011d1ad.chunk.js.map comparison

comparison x/static/js/491.0011d1ad.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

author	fubar
date	Sat, 05 Oct 2024 23:58:05 +0000
parents
children

comparison

equal deleted inserted replaced

124:137e08517410	125:49f3d3878413
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b.get('start'))\n }\n\n return features\n}\n\nexport default class FromConfigAdapter extends BaseFeatureDataAdapter {\n protected features: Map<string, Feature[]>\n\n constructor(\n conf: AnyConfigurationModel,\n getSubAdapter?: getSubAdapterType,\n pluginManager?: PluginManager,\n ) {\n super(conf, getSubAdapter, pluginManager)\n const feats = readConfObject(conf, 'features') as SimpleFeatureSerialized[]\n this.features = makeFeatures(feats)\n }\n\n async getRefNames() {\n return [...this.features.keys()]\n }\n\n async getRefNameAliases() {\n return [...this.features.values()].map(featureArray => ({\n refName: featureArray[0]!.get('refName'),\n aliases: featureArray[0]!.get('aliases'),\n }))\n }\n\n getFeatures(region: NoAssemblyRegion) {\n const { refName, start, end } = region\n\n return ObservableCreate<Feature>(async observer => {\n const features = this.features.get(refName) \|\| []\n for (const f of features) {\n if (f.get('end') > start && f.get('start') < end) {\n observer.next(f)\n }\n }\n observer.complete()\n })\n }\n\n freeResources(/* { region } /): void {}\n}\n","import {\n BaseAdapter,\n RegionsAdapter,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport {\n Feature,\n SimpleFeatureSerialized,\n} from '@jbrowse/core/util/simpleFeature'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache'\nimport { makeFeatures } from '../FromConfigAdapter/FromConfigAdapter'\n\n/\n Adapter that just returns the features defined in its `features` configuration\n * key, like:\n * `\"features\": [ { \"refName\": \"ctgA\", \"start\":1, \"end\":20 }, ... ]`\n /\nexport default class FromConfigRegionsAdapter\n extends BaseAdapter\n implements RegionsAdapter\n{\n private features: Map<string, Feature[]>\n\n constructor(\n config: AnyConfigurationModel,\n getSubAdapter?: getSubAdapterType,\n pluginManager?: PluginManager,\n ) {\n super(config, getSubAdapter, pluginManager)\n const f = readConfObject(config, 'features') as SimpleFeatureSerialized[]\n this.features = makeFeatures(f)\n }\n\n /\n Get refName, start, and end for all features after collapsing any overlaps\n /\n async getRegions() {\n const regions = []\n\n // recall: features are stored in this object sorted by start coordinate\n for (const [refName, features] of this.features) {\n let currentRegion:\n \| { refName: string; start: number; end: number }\n \| undefined\n for (const feature of features) {\n if (\n currentRegion &&\n currentRegion.end >= feature.get('start') &&\n currentRegion.start <= feature.get('end')\n ) {\n currentRegion.end = feature.get('end')\n } else {\n if (currentRegion) {\n regions.push(currentRegion)\n }\n currentRegion = {\n refName,\n start: feature.get('start'),\n end: feature.get('end'),\n }\n }\n }\n if (currentRegion) {\n regions.push(currentRegion)\n }\n }\n\n // sort the regions by refName\n regions.sort((a, b) => a.refName.localeCompare(b.refName))\n\n return regions\n }\n\n freeResources(/ { region } */): void {}\n}\n"],"names":["makeFeatures","fdata","features","Map","entry","f","SimpleFeature","refName","get","bucket","set","push","refFeatures","values","sort","a","b","FromConfigAdapter","BaseFeatureDataAdapter","constructor","conf","getSubAdapter","pluginManager","super","feats","readConfObject","this","getRefNames","keys","getRefNameAliases","map","featureArray","aliases","getFeatures","region","start","end","ObservableCreate","async","observer","next","complete","freeResources","FromConfigRegionsAdapter","BaseAdapter","config","getRegions","regions","currentRegion","feature","localeCompare"],"sourceRoot":""}

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b.get('start'))\n }\n\n return features\n}\n\nexport default class FromConfigAdapter extends BaseFeatureDataAdapter {\n protected features: Map<string, Feature[]>\n\n constructor(\n conf: AnyConfigurationModel,\n getSubAdapter?: getSubAdapterType,\n pluginManager?: PluginManager,\n ) {\n super(conf, getSubAdapter, pluginManager)\n const feats = readConfObject(conf, 'features') as SimpleFeatureSerialized[]\n this.features = makeFeatures(feats)\n }\n\n async getRefNames() {\n return [...this.features.keys()]\n }\n\n async getRefNameAliases() {\n return [...this.features.values()].map(featureArray => ({\n refName: featureArray[0]!.get('refName'),\n aliases: featureArray[0]!.get('aliases'),\n }))\n }\n\n getFeatures(region: NoAssemblyRegion) {\n const { refName, start, end } = region\n\n return ObservableCreate<Feature>(async observer => {\n const features = this.features.get(refName) || []\n for (const f of features) {\n if (f.get('end') > start && f.get('start') < end) {\n observer.next(f)\n }\n }\n observer.complete()\n })\n }\n\n freeResources(/* { region } */): void {}\n}\n","import {\n BaseAdapter,\n RegionsAdapter,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport {\n Feature,\n SimpleFeatureSerialized,\n} from '@jbrowse/core/util/simpleFeature'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache'\nimport { makeFeatures } from '../FromConfigAdapter/FromConfigAdapter'\n\n/**\n * Adapter that just returns the features defined in its `features` configuration\n * key, like:\n * `\"features\": [ { \"refName\": \"ctgA\", \"start\":1, \"end\":20 }, ... ]`\n */\nexport default class FromConfigRegionsAdapter\n extends BaseAdapter\n implements RegionsAdapter\n{\n private features: Map<string, Feature[]>\n\n constructor(\n config: AnyConfigurationModel,\n getSubAdapter?: getSubAdapterType,\n pluginManager?: PluginManager,\n ) {\n super(config, getSubAdapter, pluginManager)\n const f = readConfObject(config, 'features') as SimpleFeatureSerialized[]\n this.features = makeFeatures(f)\n }\n\n /**\n * Get refName, start, and end for all features after collapsing any overlaps\n */\n async getRegions() {\n const regions = []\n\n // recall: features are stored in this object sorted by start coordinate\n for (const [refName, features] of this.features) {\n let currentRegion:\n | { refName: string; start: number; end: number }\n | undefined\n for (const feature of features) {\n if (\n currentRegion &&\n currentRegion.end >= feature.get('start') &&\n currentRegion.start <= feature.get('end')\n ) {\n currentRegion.end = feature.get('end')\n } else {\n if (currentRegion) {\n regions.push(currentRegion)\n }\n currentRegion = {\n refName,\n start: feature.get('start'),\n end: feature.get('end'),\n }\n }\n }\n if (currentRegion) {\n regions.push(currentRegion)\n }\n }\n\n // sort the regions by refName\n regions.sort((a, b) => a.refName.localeCompare(b.refName))\n\n return regions\n }\n\n freeResources(/* { region } */): void {}\n}\n"],"names":["makeFeatures","fdata","features","Map","entry","f","SimpleFeature","refName","get","bucket","set","push","refFeatures","values","sort","a","b","FromConfigAdapter","BaseFeatureDataAdapter","constructor","conf","getSubAdapter","pluginManager","super","feats","readConfObject","this","getRefNames","keys","getRefNameAliases","map","featureArray","aliases","getFeatures","region","start","end","ObservableCreate","async","observer","next","complete","freeResources","FromConfigRegionsAdapter","BaseAdapter","config","getRegions","regions","currentRegion","feature","localeCompare"],"sourceRoot":""}

Mercurial > repos > fubar > jbrowse2

comparison x/static/js/491.0011d1ad.chunk.js.map @ 125:49f3d3878413 draft