jbrowse2: x/static/js/5668.73016b9c.chunk.js.map comparison

comparison x/static/js/5668.73016b9c.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

author	fubar
date	Sat, 05 Oct 2024 23:58:05 +0000
parents
children

comparison

equal deleted inserted replaced

124:137e08517410	125:49f3d3878413
	1 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React from 'react'\nimport { useTheme } from '@mui/material'\nimport { stripAlpha } from '@jbrowse/core/util'\n\nexport default function SVGBackground({\n width,\n height,\n shift,\n}: {\n width: number\n height: number\n shift: number\n}) {\n const theme = useTheme()\n return (\n <rect\n width={width + shift * 2}\n height={height}\n fill={stripAlpha(theme.palette.background.default)}\n />\n )\n}\n","import React from 'react'\nimport { when } from 'mobx'\nimport { getSession, renderToStaticMarkup, sum } from '@jbrowse/core/util'\nimport { ThemeProvider } from '@mui/material'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport { getRoot } from 'mobx-state-tree'\nimport {\n SVGTracks,\n SVGRuler,\n totalHeight,\n} from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport SVGBackground from './SVGBackground'\nimport { ExportSvgOptions, BreakpointViewModel } from '../model'\nimport Overlay from '../components/Overlay'\nimport { getTrackNameMaxLen, getTrackOffsets } from './util'\n\ntype BSV = BreakpointViewModel\n\n// render LGV to SVG\nexport async function renderToSvg(model: BSV, opts: ExportSvgOptions) {\n const {\n textHeight = 18,\n headerHeight = 30,\n rulerHeight = 30,\n fontSize = 13,\n trackLabels = 'offset',\n Wrapper = ({ children }) => children,\n themeName = 'default',\n } = opts\n\n const { createRootFn } = getRoot<any>(model)\n const session = getSession(model)\n const theme = session.allThemes?.()[themeName]\n const { width, views } = model\n const shift = 50\n const offset = headerHeight + rulerHeight\n const heights = views.map(\n v => totalHeight(v.tracks, textHeight, trackLabels) + offset,\n )\n const totalHeightSvg = sum(heights) + 100\n const displayResults = await Promise.all(\n views.map(\n async view =>\n ({\n view,\n data: await Promise.all(\n view.tracks.map(async track => {\n const d = track.displays[0]\n await when(() => (d.ready !== undefined ? d.ready : true))\n return { track, result: await d.renderSvg({ ...opts, theme }) }\n }),\n ),\n }) as const,\n ),\n )\n\n const trackLabelMaxLen = getTrackNameMaxLen(views, fontSize, session) + 40\n const trackLabelOffset = trackLabels === 'left' ? trackLabelMaxLen : 0\n const textOffset = trackLabels === 'offset' ? textHeight : 0\n const trackOffsets = views.map((view, idx) =>\n getTrackOffsets(\n view,\n textOffset,\n fontSize + (idx > 0 ? heights[idx - 1]! : 0) + offset,\n ),\n )\n const w = width + trackLabelOffset\n const t = createJBrowseTheme(theme)\n\n // the xlink namespace is used for rendering <image> tag\n return renderToStaticMarkup(\n <ThemeProvider theme={t}>\n <Wrapper>\n <svg\n width={width}\n height={totalHeightSvg}\n xmlns=\"http://www.w3.org/2000/svg\"\n xmlnsXlink=\"http://www.w3.org/1999/xlink\"\n viewBox={[0, 0, w + shift * 2, totalHeightSvg].toString()}\n >\n <SVGBackground width={w} height={totalHeightSvg} shift={shift} />\n {views[0] ? 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React from 'react'\nimport { useTheme } from '@mui/material'\nimport { stripAlpha } from '@jbrowse/core/util'\n\nexport default function SVGBackground({\n width,\n height,\n shift,\n}: {\n width: number\n height: number\n shift: number\n}) {\n const theme = useTheme()\n return (\n <rect\n width={width + shift * 2}\n height={height}\n fill={stripAlpha(theme.palette.background.default)}\n />\n )\n}\n","import React from 'react'\nimport { when } from 'mobx'\nimport { getSession, renderToStaticMarkup, sum } from '@jbrowse/core/util'\nimport { ThemeProvider } from '@mui/material'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport { getRoot } from 'mobx-state-tree'\nimport {\n SVGTracks,\n SVGRuler,\n totalHeight,\n} from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport SVGBackground from './SVGBackground'\nimport { ExportSvgOptions, BreakpointViewModel } from '../model'\nimport Overlay from '../components/Overlay'\nimport { getTrackNameMaxLen, getTrackOffsets } from './util'\n\ntype BSV = BreakpointViewModel\n\n// render LGV to SVG\nexport async function renderToSvg(model: BSV, opts: ExportSvgOptions) {\n const {\n textHeight = 18,\n headerHeight = 30,\n rulerHeight = 30,\n fontSize = 13,\n trackLabels = 'offset',\n Wrapper = ({ children }) => children,\n themeName = 'default',\n } = opts\n\n const { createRootFn } = getRoot<any>(model)\n const session = getSession(model)\n const theme = session.allThemes?.()[themeName]\n const { width, views } = model\n const shift = 50\n const offset = headerHeight + rulerHeight\n const heights = views.map(\n v => totalHeight(v.tracks, textHeight, trackLabels) + offset,\n )\n const totalHeightSvg = sum(heights) + 100\n const displayResults = await Promise.all(\n views.map(\n async view =>\n ({\n view,\n data: await Promise.all(\n view.tracks.map(async track => {\n const d = track.displays[0]\n await when(() => (d.ready !== undefined ? d.ready : true))\n return { track, result: await d.renderSvg({ ...opts, theme }) }\n }),\n ),\n }) as const,\n ),\n )\n\n const trackLabelMaxLen = getTrackNameMaxLen(views, fontSize, session) + 40\n const trackLabelOffset = trackLabels === 'left' ? trackLabelMaxLen : 0\n const textOffset = trackLabels === 'offset' ? textHeight : 0\n const trackOffsets = views.map((view, idx) =>\n getTrackOffsets(\n view,\n textOffset,\n fontSize + (idx > 0 ? heights[idx - 1]! : 0) + offset,\n ),\n )\n const w = width + trackLabelOffset\n const t = createJBrowseTheme(theme)\n\n // the xlink namespace is used for rendering <image> tag\n return renderToStaticMarkup(\n <ThemeProvider theme={t}>\n <Wrapper>\n <svg\n width={width}\n height={totalHeightSvg}\n xmlns=\"http://www.w3.org/2000/svg\"\n xmlnsXlink=\"http://www.w3.org/1999/xlink\"\n viewBox={[0, 0, w + shift * 2, totalHeightSvg].toString()}\n >\n <SVGBackground width={w} height={totalHeightSvg} shift={shift} />\n {views[0] ? (\n <g transform={`translate(${shift} ${fontSize})`}>\n <g transform={`translate(${trackLabelOffset})`}>\n <text x={0} fontSize={fontSize} fill={t.palette.text.primary}>\n {views[0].assemblyNames.join(', ')}\n </text>\n\n <SVGRuler model={displayResults[0]!.view} fontSize={fontSize} />\n </g>\n <SVGTracks\n textHeight={textHeight}\n trackLabels={trackLabels}\n fontSize={fontSize}\n model={displayResults[0]!.view}\n displayResults={displayResults[0]!.data}\n offset={offset}\n trackLabelOffset={trackLabelOffset}\n />\n </g>\n ) : null}\n\n {views[1] ? (\n <g transform={`translate(${shift} ${fontSize + heights[0]!})`}>\n <g transform={`translate(${trackLabelOffset})`}>\n <text x={0} fontSize={fontSize} fill={t.palette.text.primary}>\n {views[1].assemblyNames.join(', ')}\n </text>\n <SVGRuler model={displayResults[1]!.view} fontSize={fontSize} />\n </g>\n <SVGTracks\n textHeight={textHeight}\n trackLabels={trackLabels}\n fontSize={fontSize}\n model={displayResults[1]!.view}\n displayResults={displayResults[1]!.data}\n offset={offset}\n trackLabelOffset={trackLabelOffset}\n />\n </g>\n ) : null}\n\n <defs>\n <clipPath id=\"clip-bsv\">\n <rect x={0} y={0} width={width} height={totalHeightSvg} />\n </clipPath>\n </defs>\n <g\n transform={`translate(${trackLabelOffset + shift})`}\n clipPath=\"url(#clip-bsv)\"\n >\n {model.matchedTracks.map(track => (\n <Overlay\n parentRef={{ current: null }}\n key={track.configuration.trackId}\n model={model}\n trackId={track.configuration.trackId}\n getTrackYPosOverride={(id, level) => trackOffsets[level]![id]!}\n />\n ))}\n </g>\n </svg>\n </Wrapper>\n </ThemeProvider>,\n createRootFn,\n )\n}\n","import { AbstractSessionModel, max, measureText } from '@jbrowse/core/util'\n\n// locals\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport { getTrackName } from '@jbrowse/core/util/tracks'\n\nexport function getTrackNameMaxLen(\n views: LinearGenomeViewModel[],\n fontSize: number,\n session: AbstractSessionModel,\n) {\n return max(\n views.flatMap(view =>\n view.tracks.map(t =>\n measureText(getTrackName(t.configuration, session), fontSize),\n ),\n ),\n 0,\n )\n}\nexport function getTrackOffsets(\n view: LinearGenomeViewModel,\n textOffset: number,\n extra = 0,\n) {\n const offsets = {} as Record<string, number>\n let curr = textOffset\n for (const track of view.tracks) {\n offsets[track.configuration.trackId] = curr + extra\n curr += track.displays[0].height + textOffset\n }\n return offsets\n}\n"],"names":["SVGBackground","width","height","shift","theme","useTheme","React","fill","stripAlpha","palette","background","default","async","renderToSvg","model","opts","textHeight","headerHeight","rulerHeight","fontSize","trackLabels","Wrapper","children","themeName","createRootFn","getRoot","session","getSession","allThemes","views","offset","heights","map","v","totalHeight","tracks","totalHeightSvg","sum","displayResults","Promise","all","view","data","d","track","displays","when","undefined","ready","result","renderSvg","trackLabelMaxLen","max","flatMap","t","measureText","getTrackName","configuration","getTrackNameMaxLen","trackLabelOffset","textOffset","trackOffsets","idx","extra","offsets","curr","trackId","getTrackOffsets","w","createJBrowseTheme","renderToStaticMarkup","ThemeProvider","xmlns","xmlnsXlink","viewBox","toString","transform","x","text","primary","assemblyNames","join","SVGRuler","SVGTracks","id","y","clipPath","matchedTracks","Overlay","parentRef","current","key","getTrackYPosOverride","level"],"sourceRoot":""}

Mercurial > repos > fubar > jbrowse2

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