jbrowse2: x/static/js/9206.bbf34514.chunk.js.map comparison

comparison x/static/js/9206.bbf34514.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

author	fubar
date	Sat, 05 Oct 2024 23:58:05 +0000
parents
children

comparison

equal deleted inserted replaced

124:137e08517410	125:49f3d3878413
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null\n : openLocation(loc, this.pluginManager).readFile('utf8')\n }\n\n public async setup() {\n if (!this.setupP) {\n this.setupP = this.setupPre().catch((e: unknown) => {\n this.setupP = undefined\n throw e\n })\n }\n return this.setupP\n }\n\n public getFeatures(region: NoAssemblyRegion, opts?: BaseOptions) {\n const { refName, start, end } = region\n return ObservableCreate<Feature>(async observer => {\n const { fasta } = await this.setup()\n const size = await fasta.getSequenceSize(refName, opts)\n const regionEnd = Math.min(size, end)\n const chunks = []\n const chunkSize = 128000\n\n const s = start - (start % chunkSize)\n const e = end + (chunkSize - (end % chunkSize))\n for (let chunkStart = s; chunkStart < e; chunkStart += chunkSize) {\n const r = {\n refName,\n start: chunkStart,\n end: chunkStart + chunkSize,\n }\n chunks.push(\n this.seqCache.get(JSON.stringify(r), { ...r, fasta }, opts?.signal),\n )\n }\n const seq = (await Promise.all(chunks))\n .join('')\n .slice(start - s)\n .slice(0, end - start)\n if (seq) {\n observer.next(\n new SimpleFeature({\n id: `${refName} ${start}-${regionEnd}`,\n data: { refName, start, end: regionEnd, seq },\n }),\n )\n }\n observer.complete()\n })\n }\n\n /*\n called to provide a hint that data tied to a certain region\n * will not be needed for the foreseeable future and can be purged\n * from caches, etc\n /\n public freeResources(/ { region } */): void {}\n}\n"],"names":["BgzipFastaAdapter","IndexedFasta","setupPre","fastaLocation","this","getConf","faiLocation","gziLocation","fastaOpts","fasta","openLocation","pluginManager","fai","gzi","BgzipIndexedFasta","IndexedFastaAdapter","BaseSequenceAdapter","seqCache","AbortablePromiseCache","cache","QuickLRU","maxSize","fill","async","args","signal","refName","start","end","getSequence","getRefNames","opts","setup","getSequenceNames","getRegions","seqSizes","getSequenceSizes","Object","keys","map","getHeader","loc","uri","readFile","setupP","catch","e","undefined","getFeatures","region","ObservableCreate","size","getSequenceSize","regionEnd","Math","min","chunks","chunkSize","s","chunkStart","r","push","get","JSON","stringify","seq","Promise","all","join","slice","observer","next","SimpleFeature","id","data","complete","freeResources"],"sourceRoot":""}

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null\n : openLocation(loc, this.pluginManager).readFile('utf8')\n }\n\n public async setup() {\n if (!this.setupP) {\n this.setupP = this.setupPre().catch((e: unknown) => {\n this.setupP = undefined\n throw e\n })\n }\n return this.setupP\n }\n\n public getFeatures(region: NoAssemblyRegion, opts?: BaseOptions) {\n const { refName, start, end } = region\n return ObservableCreate<Feature>(async observer => {\n const { fasta } = await this.setup()\n const size = await fasta.getSequenceSize(refName, opts)\n const regionEnd = Math.min(size, end)\n const chunks = []\n const chunkSize = 128000\n\n const s = start - (start % chunkSize)\n const e = end + (chunkSize - (end % chunkSize))\n for (let chunkStart = s; chunkStart < e; chunkStart += chunkSize) {\n const r = {\n refName,\n start: chunkStart,\n end: chunkStart + chunkSize,\n }\n chunks.push(\n this.seqCache.get(JSON.stringify(r), { ...r, fasta }, opts?.signal),\n )\n }\n const seq = (await Promise.all(chunks))\n .join('')\n .slice(start - s)\n .slice(0, end - start)\n if (seq) {\n observer.next(\n new SimpleFeature({\n id: `${refName} ${start}-${regionEnd}`,\n data: { refName, start, end: regionEnd, seq },\n }),\n )\n }\n observer.complete()\n })\n }\n\n /**\n * called to provide a hint that data tied to a certain region\n * will not be needed for the foreseeable future and can be purged\n * from caches, etc\n */\n public freeResources(/* { region } */): void {}\n}\n"],"names":["BgzipFastaAdapter","IndexedFasta","setupPre","fastaLocation","this","getConf","faiLocation","gziLocation","fastaOpts","fasta","openLocation","pluginManager","fai","gzi","BgzipIndexedFasta","IndexedFastaAdapter","BaseSequenceAdapter","seqCache","AbortablePromiseCache","cache","QuickLRU","maxSize","fill","async","args","signal","refName","start","end","getSequence","getRefNames","opts","setup","getSequenceNames","getRegions","seqSizes","getSequenceSizes","Object","keys","map","getHeader","loc","uri","readFile","setupP","catch","e","undefined","getFeatures","region","ObservableCreate","size","getSequenceSize","regionEnd","Math","min","chunks","chunkSize","s","chunkStart","r","push","get","JSON","stringify","seq","Promise","all","join","slice","observer","next","SimpleFeature","id","data","complete","freeResources"],"sourceRoot":""}

Mercurial > repos > fubar > jbrowse2

comparison x/static/js/9206.bbf34514.chunk.js.map @ 125:49f3d3878413 draft