Mercurial > repos > fubar > jbrowse2

comparison gff3_rebase.py @ 17:4c201a3d4755 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit a37bfdfc108501b11c7b2aa15efb1bd16f0c4b66
author fubar
date Sun, 28 Jan 2024 06:48:52 +0000
parents d78175596286
children bde6b1d09f7d
comparison
equal deleted inserted replaced
16:1fe91657bfd6 17:4c201a3d4755
63 else: 63 else:
64 yield feature 64 yield feature
65 65
66 if hasattr(feature, "sub_features"): 66 if hasattr(feature, "sub_features"):
67 for x in feature_lambda( 67 for x in feature_lambda(
68 feature.sub_features, test, test_kwargs, subfeatures=subfeatures 68 feature.sub_features,
69 test,
70 test_kwargs,
71 subfeatures=subfeatures,
69 ): 72 ):
70 yield x 73 yield x
71 74
72 75
73 def feature_test_qual_value(feature, **kwargs): 76 def feature_test_qual_value(feature, **kwargs):
195 "child", 198 "child",
196 type=argparse.FileType("r"), 199 type=argparse.FileType("r"),
197 help="Child GFF3 annotations to rebase against parent", 200 help="Child GFF3 annotations to rebase against parent",
198 ) 201 )
199 parser.add_argument( 202 parser.add_argument(
200 "--interpro", action="store_true", help="Interpro specific modifications" 203 "--interpro",
204 action="store_true",
205 help="Interpro specific modifications",
201 ) 206 )
202 parser.add_argument( 207 parser.add_argument(
203 "--protein2dna", 208 "--protein2dna",
204 action="store_true", 209 action="store_true",
205 help="Map protein translated results to original DNA data", 210 help="Map protein translated results to original DNA data",