Mercurial > repos > fubar > jbrowse2

comparison macros.xml @ 112:56f9a6e0fe80 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 566509061b742b73c8dd1a1db6813fbf6a7a3792
author bgruening
date Thu, 04 Jul 2024 08:40:21 +0000
parents 5d1259b88c27
children 878c27dfea9d
comparison
equal deleted inserted replaced
111:0a532764dcfa 112:56f9a6e0fe80
106 <when value="form"/> 106 <when value="form"/>
107 </conditional> 107 </conditional>
108 <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/> 108 <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
109 <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/> 109 <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/>
110 <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/> 110 <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/>
111 <param name="bpPerPx" type="integer" value="50" label="Base pairs per display pixel for default view" help="Make the default window show more or less BP of sequence. For some reason not automatable in JB2, sorry"/> 111 <param name="bpPerPx" type="integer" min="1" value="50" label="Base pairs per display pixel for default view" help="Make the default window show more or less BP of sequence. For some reason not automatable in JB2, sorry"/>
112 <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/> 112 <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/>
113 <param name="primary_color" type="color" value="#0D233F" label="Primary color"> 113 <param name="primary_color" type="color" value="#0D233F" label="Primary color">
114 <sanitizer> 114 <sanitizer>
115 <valid initial="string.ascii_letters,string.digits"> 115 <valid initial="string.ascii_letters,string.digits">
116 <add value="#"/> 116 <add value="#"/>
238 <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> 238 <param name="display" type="select" label="Display style" help="How the track will be displayed by default">
239 <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option> 239 <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option>
240 <option value="LinearPileupDisplay">LinearPileupDisplay - good for dense tracks at scale</option> 240 <option value="LinearPileupDisplay">LinearPileupDisplay - good for dense tracks at scale</option>
241 <option value="LinearArcDisplay">LinearArcDisplay</option> 241 <option value="LinearArcDisplay">LinearArcDisplay</option>
242 </param> 242 </param>
243 <param name="usebedscore" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Use column 5 as a score for the display if bed format"/> 243 <param name="usebedscore" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Use column 5 as a score for the display if bed format"
244 help="The *Bigwig extremes to bed features* tool generates bed files with scores 1 or -1. This option renders them red and blue"/>
244 </section> 245 </section>
245 </xml> 246 </xml>
246 <xml name="track_styling_feature"> 247 <xml name="track_styling_feature">
247 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> 248 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false">
248 <conditional name="track_style"> 249 <conditional name="track_style">