Mercurial > repos > fubar > jbrowse2

comparison autogenJB2.py @ 84:5c295cc220ed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 2dad2139324940fbff8aa089a72641800211e2d9-dirty
author fubar
date Wed, 03 Apr 2024 02:56:39 +0000
parents 3dcda36b97b4
children 3b2ff9864995
comparison
equal deleted inserted replaced
83:746eae952c18 84:5c295cc220ed
218 jc.config_json["assemblies"] = assconf 218 jc.config_json["assemblies"] = assconf
219 logging.debug("+++assemblies=%s, gnames=%s" % (assconf, jc.genome_names)) 219 logging.debug("+++assemblies=%s, gnames=%s" % (assconf, jc.genome_names))
220 jc.write_config() 220 jc.write_config()
221 default_session_data.update({"session_name": sessName}) 221 default_session_data.update({"session_name": sessName})
222 track_conf.update(default_session_data) 222 track_conf.update(default_session_data)
223 # jc.add_default_session(default_session_data) 223 jc.add_default_session(default_session_data)
224 jc.add_defsess_to_index(default_session_data) 224 # jc.add_defsess_to_index(default_session_data)
225 # jc.text_index() not sure what broke here. 225 # jc.text_index() not sure what broke here.
226 else: 226 else:
227 sys.stderr.write( 227 sys.stderr.write(
228 "!!!! Collection has no suitable trackfiles for autogenJB2 - nothing to process" 228 "!!!! Collection has no suitable trackfiles for autogenJB2 - nothing to process"
229 ) 229 )