Mercurial > repos > fubar > jbrowse2

comparison autogenJB2.py @ 36:5f39f745682f draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 80b849766a962bac4bd0bb8cb69c118cc42699cd-dirty
author fubar
date Thu, 29 Feb 2024 00:47:58 +0000
parents 15da358c3108
children 07849bf248e3
comparison
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35:15da358c3108 36:5f39f745682f
107 "paf": {"genome": refdat, "genome_label": trackname} 107 "paf": {"genome": refdat, "genome_label": trackname}
108 } 108 }
109 } 109 }
110 } 110 }
111 elif trext == 'bam': 111 elif trext == 'bam':
112 track_conf["conf"] = {"options": {"bam": {"bam_indices": {"bam_index": track[3]}}}} 112 track_conf = {"conf": {"options": {"bam": {"bam_indices": {"bam_index": track[3]}}}}}
113 elif trext == 'cram': 113 elif trext == 'cram':
114 track_conf["conf"] = {"options": {"cram": {"cram_indices": {"cram_index": track[3]}}}} 114 track_conf = {"conf": {"options": {"cram": {"cram_indices": {"cram_index": track[3]}}}}}
115 else: 115 else:
116 track_conf = {} 116 track_conf = {}
117 track_conf["format"] = trext 117 track_conf["format"] = trext
118 track_conf["name"] = trackname 118 track_conf["name"] = trackname
119 track_conf["label"] = trackname 119 track_conf["label"] = trackname