Mercurial > repos > fubar > jbrowse2

comparison jbrowse2.xml @ 91:6246925692cb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 0ff79bc5c2f228a5d56c84aac1b436d1cc62403d
author fubar
date Thu, 18 Apr 2024 10:57:29 +0000
parents 51980e0dafd2
children 3c4db8203fad
comparison
equal deleted inserted replaced
90:51980e0dafd2 91:6246925692cb
607 <param name="insource" value="history"/> 607 <param name="insource" value="history"/>
608 <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/Vvinifera1.fa"/> 608 <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/Vvinifera1.fa"/>
609 </conditional> 609 </conditional>
610 </conditional> 610 </conditional>
611 </repeat> 611 </repeat>
612 <repeat name="data_tracks">
613 <conditional name="data_format">
614 <param name="data_format_select" value="paf"/>
615 <conditional name="useuri">
616 <param name="insource" value="history"/>
617 <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/arabgrapepeach.paf"/>
618 </conditional>
619 </conditional>
620
621 <conditional name="pafsuseuri">
622 <conditional name="useuri">
623 <param name="insource" value="history"/>
624 <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/arabidopsis.fa"/>
625 </conditional>
626 </conditional>
627 <conditional name="pafsuseuri">
628 <conditional name="useuri">
629 <param name="insource" value="history"/>
630 <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/Vvinifera1.fa"/>
631 </conditional>
632 </conditional>
633 </repeat>
612 </repeat> 634 </repeat>
613 </repeat> 635 </repeat>
614 <repeat name="assemblies"> 636 <repeat name="assemblies">
615 <conditional name="reference_genome"> 637 <conditional name="reference_genome">
616 <param name="genome_type_select" value="uri"/> 638 <param name="genome_type_select" value="uri"/>
659 <has_archive_member path="merlin-sample.bam_5"/> 681 <has_archive_member path="merlin-sample.bam_5"/>
660 <has_archive_member path="merlinlastz.maf_6.sorted.bed.gz.tbi"/> 682 <has_archive_member path="merlinlastz.maf_6.sorted.bed.gz.tbi"/>
661 <has_archive_member path="merlin.blastxml_7.gz"/> 683 <has_archive_member path="merlin.blastxml_7.gz"/>
662 <has_archive_member path="dm3test.cool_9.hic"/> 684 <has_archive_member path="dm3test.cool_9.hic"/>
663 <has_archive_member path="peach-grape-map.paf_10"/> 685 <has_archive_member path="peach-grape-map.paf_10"/>
686 <has_archive_member path="arabgrapepeach.paf_11"/>
664 <has_archive_member path="Merlin.fa.gz.fai"/> 687 <has_archive_member path="Merlin.fa.gz.fai"/>
688 <has_archive_member path="dm3.fa.fa.gz.fai"/>
689 <has_archive_member path="Ppersica1.fa.fa.gz.fai"/>
665 <has_archive_member path="config.json"> 690 <has_archive_member path="config.json">
666 <has_json_property_with_text property="name" text="Merlin" /> 691 <has_json_property_with_text property="name" text="Merlin" />
667 </has_archive_member> 692 </has_archive_member>
668 </assert_contents> 693 </assert_contents>
669 </output> 694 </output>