Mercurial > repos > fubar > jbrowse2

comparison jbrowse2.py @ 69:7230a2422507 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 2c7d6c19a42c421de987ebfdf927c64062ebd79f-dirty
author fubar
date Fri, 29 Mar 2024 09:14:59 +0000
parents c4eb6a85db70
children 5f0ee87daef4
comparison
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68:c4eb6a85db70 69:7230a2422507
1605 "quaternary_color": root.find("metadata/general/quaternary_color").text, 1605 "quaternary_color": root.find("metadata/general/quaternary_color").text,
1606 "font_size": root.find("metadata/general/font_size").text, 1606 "font_size": root.find("metadata/general/font_size").text,
1607 } 1607 }
1608 jc.add_general_configuration(general_data) 1608 jc.add_general_configuration(general_data)
1609 trackconf = jc.config_json.get("tracks", []) 1609 trackconf = jc.config_json.get("tracks", [])
1610 logging.warn("genome_names=%s" % jc.genome_names) 1610 logging.warn("%%%%%%%%% genome_names=%s" % jc.genome_names)
1611 for gnome in jc.genome_names: 1611 for gnome in jc.genome_names:
1612 trackconf += jc.tracksToAdd[gnome] 1612 trackconf += jc.tracksToAdd[gnome]
1613 jc.config_json["tracks"] = trackconf 1613 jc.config_json["tracks"] = trackconf
1614 assconf = jc.config_json.get("assemblies", []) 1614 assconf = jc.config_json.get("assemblies", [])
1615 assconf += jc.assemblies 1615 assconf += jc.assemblies
1616 jc.config_json["assemblies"] = assconf 1616 jc.config_json["assemblies"] = assconf
1617 logging.warn("&&&assemblies=%s, gnames=%s" % (assconf, jc.genome_names))
1617 jc.write_config() 1618 jc.write_config()
1618 jc.add_default_session(default_session_data) 1619 jc.add_default_session(default_session_data)
1619 # jc.text_index() not sure what broke here. 1620 # jc.text_index() not sure what broke here.