Mercurial > repos > fubar > jbrowse2

comparison jbrowse2.py @ 14:7c2e28e144f3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5d84967148d45684d585d4e12b210dc5e12e4776
author fubar
date Mon, 22 Jan 2024 12:05:09 +0000
parents 1d86925dbb4c
children cce8dacb240f
comparison
equal deleted inserted replaced
13:1d86925dbb4c 14:7c2e28e144f3
1186 logging.info( 1186 logging.info(
1187 "@@@ regexp could not match contig:start..end in the supplied location %s - please fix" 1187 "@@@ regexp could not match contig:start..end in the supplied location %s - please fix"
1188 % ddl 1188 % ddl
1189 ) 1189 )
1190 elif self.genome_name is not None: 1190 elif self.genome_name is not None:
1191 refName = self.genome_name
1192 start = 0 1191 start = 0
1193 end = 10000 # Booh, hard coded! waiting for https://github.com/GMOD/jbrowse-components/issues/2708 1192 end = 10000 # Booh, hard coded! waiting for https://github.com/GMOD/jbrowse-components/issues/2708
1194 logging.info( 1193 logging.info(
1195 "@@@ no defaultlocation found for default session - please add one" 1194 "@@@ no defaultlocation found for default session - please add one"
1196 ) 1195 )