Mercurial > repos > fubar > jbrowse2

comparison jb2_urlconf.py @ 49:7e867ff86e44 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
author fubar
date Thu, 07 Mar 2024 00:27:48 +0000
parents 460d5b6c5d98
children 94264fe60478
comparison
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48:460d5b6c5d98 49:7e867ff86e44
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1 inconf = open('config.json', 'r').readlines() 2 inconf = open('config.json', 'r').readlines()
2 with open('config.json.local', 'w') as bak: 3 with open('config.json.local', 'w') as bak:
3 bak.write(''.join(inconf)) 4 bak.write(''.join(inconf))
4 urlbase = "https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/hum/" 5 urlbase = "https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/hum/"
5 utag = '"uri":' 6 utag = '"uri":'
6 for i, row in enumerate(inconf): 7 for i, row in enumerate(inconf):
7 ispath = False 8 ispath = False
8 if row.strip().startswith(utag): 9 if row.strip().startswith(utag):
9 ispath = True 10 ispath = True
10 parth = row.split(utag)[1].strip() 11 parth = row.split(utag)[1].strip().replace('"','').replace("'",'')
11 inconf[i] = '%s%s' % (urlbase, parth) 12 inconf[i] = '%s "%s%s"' % (utag, urlbase, parth)
12 with open('config.json', 'w') as outconf: 13 with open('config.json', 'w') as outconf:
13 outconf.write(''.join(inconf)) 14 outconf.write(''.join(inconf))
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