Mercurial > repos > fubar > jbrowse2

comparison autogenJB2.py @ 60:81d535970196 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 403a35e1245fa5e62f4be6116a725b9e4d9c353a
author fubar
date Mon, 25 Mar 2024 02:10:05 +0000
parents 94264fe60478
children ab0d6782a95f
comparison
equal deleted inserted replaced
59:f807e219cec3 60:81d535970196
170 170
171 if keys: 171 if keys:
172 for key in keys: 172 for key in keys:
173 if trext in [ 173 if trext in [
174 "bigwig", 174 "bigwig",
175 "gff3", 175 "gff", "gff3",
176 "gff",
177 "vcf", 176 "vcf",
178 "maf", 177 "maf",
179 ]: 178 ]:
180 default_session_data["visibility"]["default_on"].append(key) 179 default_session_data["visibility"]["default_on"].append(key)
181 else: 180 else:
182 default_session_data["visibility"]["default_off"].append( 181 default_session_data["visibility"]["default_off"].append(
183 key 182 key
184 ) 183 )
184 if trext in ["gff", "gff3", "bed", "vcf", "maf", "blastxml"]:
185 ttype = "LinearBasicDisplay"
186 if trext == "vcf":
187 ttype = "LinearVariantDisplay"
188 style_json = {
189 "type": ttype,
190 "trackShowLabels": False,
191 "trackShowDescriptions": False
192 }
193 default_session_data["style"][key] = style_json
185 # general_data = { 194 # general_data = {
186 # "analytics": root.find("metadata/general/analytics").text, 195 # "analytics": root.find("metadata/general/analytics").text,
187 # "primary_color": root.find("metadata/general/primary_color").text, 196 # "primary_color": root.find("metadata/general/primary_color").text,
188 # "secondary_color": root.find("metadata/general/secondary_color").text, 197 # "secondary_color": root.find("metadata/general/secondary_color").text,
189 # "tertiary_color": root.find("metadata/general/tertiary_color").text, 198 # "tertiary_color": root.find("metadata/general/tertiary_color").text,