Mercurial > repos > fubar > jbrowse2

comparison macros.xml @ 60:81d535970196 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 403a35e1245fa5e62f4be6116a725b9e4d9c353a
author fubar
date Mon, 25 Mar 2024 02:10:05 +0000
parents f807e219cec3
children ab0d6782a95f
comparison
equal deleted inserted replaced
59:f807e219cec3 60:81d535970196
540 </conditional> 540 </conditional>
541 </xml> 541 </xml>
542 <xml name="pafref_conditional" token_label="Track Data" token_format="data"> 542 <xml name="pafref_conditional" token_label="Track Data" token_format="data">
543 <conditional name="pafuseuri"> 543 <conditional name="pafuseuri">
544 <param name="insource" type="select" label="PAF reference data from a history file or an internet URI?" 544 <param name="insource" type="select" label="PAF reference data from a history file or an internet URI?"
545 help="A public URI implies that all the associated tabix files are also in place. They are created for history files"> 545 help="Multiple references can be used for mashmap PAF. A URI source requires all the associated tabix index files to be in place.">
546 <option value="history" selected="true">PAF genome reference data from a history file</option> 546 <option value="history" selected="true">PAF reference comparison genome from a history file</option>
547 <option value="uri">PAF genome reference data from tabix data URI - index files must be available at corresponding URI</option> 547 <option value="uri">PAF reference comparison genome tabix .gz URI with index files at the corresponding URIs</option>
548 </param> 548 </param>
549 <when value="history"> 549 <when value="history">
550 <repeat name="refgenomes" title="Add one or more comparison genomes used to make the PAF"> 550 <repeat name="refgenomes" title="PAF reference comparison genome used to make the PAF">
551 <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" /> 551 <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" />
552 <param label="Short name for track display" name="annoname" type="text" > 552 <param label="Short name for track display" name="annoname" type="text" >
553 <sanitizer invalid_char="_"> 553 <sanitizer invalid_char="_">
554 <valid initial="string.printable" > 554 <valid initial="string.printable" >
555 <remove value="'" /> 555 <remove value="'" />
557 </sanitizer> 557 </sanitizer>
558 </param> 558 </param>
559 </repeat> 559 </repeat>
560 </when> 560 </when>
561 <when value="uri"> 561 <when value="uri">
562 <repeat name="refgenomes" title="Provide URI for a comparison genomesused to make the PAF"> 562 <repeat name="refgenomes" title="PAF reference comparison genome URI">
563 <param label="@LABEL@" name="annotation" type="text" /> 563 <param label="@LABEL@" name="annotation" type="text" />
564 <param label="Short name for track display" name="annoname" type="text" > 564 <param label="Short name for track display" name="annoname" type="text" >
565 <sanitizer invalid_char="_"> 565 <sanitizer invalid_char="_">
566 <valid initial="string.printable" > 566 <valid initial="string.printable" >
567 <remove value="'" /> 567 <remove value="'" />