Mercurial > repos > fubar > jbrowse2

comparison jbrowse2.py @ 75:9c8459ce7d88 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit d03454f949af9f3fff638f6a3e52fe42bc96be3b-dirty
author fubar
date Mon, 01 Apr 2024 04:03:16 +0000
parents 13ede71c3a4b
children 9e3eb6b26f85
comparison
equal deleted inserted replaced
74:13ede71c3a4b 75:9c8459ce7d88
1485 """ 1485 """
1486 new_index = "Nothing written" 1486 new_index = "Nothing written"
1487 session_spec = {"views": []} 1487 session_spec = {"views": []}
1488 logging.debug("def ass_first=%s\ndata=%s" % (self.ass_first_contigs, data)) 1488 logging.debug("def ass_first=%s\ndata=%s" % (self.ass_first_contigs, data))
1489 for first_contig in self.ass_first_contigs: 1489 for first_contig in self.ass_first_contigs:
1490 gnome, refName, end = first_contig 1490 logging.debug("first contig=%s" % self.ass_first_contigs)
1491 [gnome, refName, end] = first_contig
1491 start = 0 1492 start = 0
1492 if False or data.get("defaultLocation", ""): 1493 if False or data.get("defaultLocation", ""):
1493 loc_match = re.search( 1494 loc_match = re.search(
1494 r"^([^:]+):([\d,]*)\.*([\d,]*)$", data["defaultLocation"] 1495 r"^([^:]+):([\d,]*)\.*([\d,]*)$", data["defaultLocation"]
1495 ) 1496 )