Mercurial > repos > fubar > jbrowse2

comparison maf2bed.py @ 98:b1260bca5fdc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 44d8fc559ecf5463a8f753561976fa26686c96f6
author bgruening
date Wed, 05 Jun 2024 10:00:07 +0000
parents e7a6f7a7148d
children
comparison
equal deleted inserted replaced
97:74074746ccd8 98:b1260bca5fdc
30 temp = line 30 temp = line
31 buffer = temp if buffer == '' else f"{buffer},{temp}" 31 buffer = temp if buffer == '' else f"{buffer},{temp}"
32 elif line[0] == 'a': 32 elif line[0] == 'a':
33 score = int(line[1].split('=')[1]) 33 score = int(line[1].split('=')[1])
34 if id > 0: 34 if id > 0:
35 sys.stdout.write('\t'.join([chrom, '%d' % start, '%d' % end, f"{sys.argv[1]}_{id}", '%d' % score, buffer])+ '\n') 35 sys.stdout.write('\t'.join([chrom, '%d' % start, '%d' % end, f"{sys.argv[1]}_{id}", '%d' % score, buffer]) + '\n')
36 id += 1 36 id += 1
37 buffer = '' 37 buffer = ''
38 elif line[0] == 's': 38 elif line[0] == 's':
39 line = line[1:] 39 line = line[1:]
40 line = ':'.join(line) 40 line = ':'.join(line)