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comparison test-data/all_fasta.loc @ 10:c60b17456297 draft

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planemo upload commit 740eeca506257070c95f4e9f1a75911c31db5a04
author fubar
date Sat, 20 Jan 2024 07:13:26 +0000
parents d78175596286
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9:a26c41e304c3 10:c60b17456297
2 #under the "genome" directory (a directory that contains a directory 2 #under the "genome" directory (a directory that contains a directory
3 #for each build). The script extract_fasta.py will generate the file 3 #for each build). The script extract_fasta.py will generate the file
4 #all_fasta.loc. This file has the format (white space characters are 4 #all_fasta.loc. This file has the format (white space characters are
5 #TAB characters): 5 #TAB characters):
6 # 6 #
7 #<unique_build_id> <dbkey> <display_name> <file_path> 7 #<unique_build_id> <dbkey> <display_name> <file_path>
8 # 8 #
9 #So, all_fasta.loc could look something like this: 9 #So, all_fasta.loc could look something like this:
10 # 10 #
11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa 12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa 13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
14 # 14 #
15 #Your all_fasta.loc file should contain an entry for each individual 15 #Your all_fasta.loc file should contain an entry for each individual
16 #fasta file. So there will be multiple fasta files for each build, 16 #fasta file. So there will be multiple fasta files for each build,
17 #such as with hg19 above. 17 #such as with hg19 above.
18 # 18 #
19 merlin merlin Merlin ${__HERE__}/merlin.fa