Mercurial > repos > fubar > jbrowse2

comparison macros.xml @ 71:e26a8a6d2d2e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit cf208cecf0140ff43d145a44713ab7108057fb8b
author fubar
date Sat, 30 Mar 2024 07:15:04 +0000
parents c4eb6a85db70
children dff27c9f6d72
comparison
equal deleted inserted replaced
70:5f0ee87daef4 71:e26a8a6d2d2e
436 </when> 436 </when>
437 </conditional> 437 </conditional>
438 </section> 438 </section>
439 </xml> 439 </xml>
440 440
441 <!-- TODO use this -->
442 <xml name="track_menu"> 441 <xml name="track_menu">
443 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> 442 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false">
444 <repeat name="track_menu" title="Track Menu"> 443 <repeat name="track_menu" title="Track Menu">
445 <param label="Menu action" 444 <param label="Menu action"
446 type="select" 445 type="select"
554 help="Multiple references can be used for mashmap PAF. A URI source requires all the associated tabix index files to be in place."> 553 help="Multiple references can be used for mashmap PAF. A URI source requires all the associated tabix index files to be in place.">
555 <option value="history" selected="true">PAF reference comparison genome from a history file</option> 554 <option value="history" selected="true">PAF reference comparison genome from a history file</option>
556 <option value="uri">PAF reference comparison genome tabix .gz URI with index files at the corresponding URIs</option> 555 <option value="uri">PAF reference comparison genome tabix .gz URI with index files at the corresponding URIs</option>
557 </param> 556 </param>
558 <when value="history"> 557 <when value="history">
559 <repeat name="refgenomes" title="PAF reference comparison genome used to make the PAF"> 558 <repeat name="refgenomes" title="PAF reference comparison genome used to make the PAF" min="1">
560 <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" /> 559 <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" />
561 <param label="Short name for track display" name="annoname" type="text" help="No spaces allowed here"> 560 <param label="Short name for track display" name="annoname" type="text" help="No spaces allowed here">
562 <sanitizer invalid_char="_"> 561 <sanitizer invalid_char="_">
563 <valid initial="string.printable" > 562 <valid initial="string.printable" >
564 <remove value=" " /> 563 <remove value=" " />
566 </sanitizer> 565 </sanitizer>
567 </param> 566 </param>
568 </repeat> 567 </repeat>
569 </when> 568 </when>
570 <when value="uri"> 569 <when value="uri">
571 <repeat name="refgenomes" title="PAF reference comparison genome URI"> 570 <repeat name="refgenomes" title="PAF reference comparison genome URI" min="1">
572 <param label="@LABEL@" name="annotation" type="text" /> 571 <param label="@LABEL@" name="annotation" type="text" />
573 <param label="Short name for track display" name="annoname" type="text" > 572 <param label="Short name for this reference" name="annoname" type="text" help="Short names take less track space">
574 <sanitizer invalid_char="_"> 573 <sanitizer invalid_char="_">
575 <valid initial="string.printable" > 574 <valid initial="string.printable" >
576 <remove value="'" /> 575 <remove value="'" />
577 </valid> 576 </valid>
578 </sanitizer> 577 </sanitizer>