Mercurial > repos > fubar > jbrowse2

comparison macros.xml @ 5:efc64d8f4b72 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 79e81bef99f582680d9aa4eec88980c675f3fae9
author fubar
date Tue, 09 Jan 2024 05:24:48 +0000
parents 2de9f585505b
children 9a168aa68f06
comparison
equal deleted inserted replaced
4:54396f0323f4 5:efc64d8f4b72
278 <option value="default_on" selected="true">On when browser opens</option> 278 <option value="default_on" selected="true">On when browser opens</option>
279 </param> 279 </param>
280 </xml> 280 </xml>
281 281
282 <xml name="track_styling_linear"> 282 <xml name="track_styling_linear">
283 <param label="Show labels" name="show_labels" type="boolean" checked="true" truevalue="true" falsevalue="false" /> 283 <param label="Show labels" name="show_labels" type="boolean" checked="false" truevalue="true" falsevalue="false" />
284 <param label="Show descriptions" name="show_descriptions" type="boolean" checked="true" truevalue="true" falsevalue="false" /> 284 <param label="Show descriptions" name="show_descriptions" type="boolean" checked="false" truevalue="true" falsevalue="false" />
285 <param name="display_mode" type="select" label="Display mode"> 285 <param name="display_mode" type="select" label="Display mode">
286 <option value="normal" selected="true">normal</option> 286 <option value="normal" selected="true">normal</option>
287 <option value="compact">compact</option> 287 <option value="compact">compact</option>
288 <option value="reducedRepresentation">reducedRepresentation</option> 288 <option value="reducedRepresentation">reducedRepresentation</option>
289 <option value="collapse">collapse</option> 289 <option value="collapse">collapse</option>
294 <xml name="track_styling_feature"> 294 <xml name="track_styling_feature">
295 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> 295 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false">
296 <conditional name="track_style"> 296 <conditional name="track_style">
297 <param name="display" type="select" label="Display style" help="How the track will be displayed by default"> 297 <param name="display" type="select" label="Display style" help="How the track will be displayed by default">
298 <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option> 298 <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option>
299 <option value="LinearPileupDisplay">LinearPileupDisplay - good for dense tracks at scale</option>
299 <option value="LinearArcDisplay">LinearArcDisplay</option> 300 <option value="LinearArcDisplay">LinearArcDisplay</option>
300 </param> 301 </param>
302 <when value="LinearPileupDisplay">
303 <expand macro="track_styling_linear"/>
304 </when>
301 <when value="LinearBasicDisplay"> 305 <when value="LinearBasicDisplay">
302 <expand macro="track_styling_linear"/> 306 <expand macro="track_styling_linear"/>
303 307
304 <!-- examples: https://github.com/GMOD/jbrowse-components/discussions/2729 308 <!-- examples: https://github.com/GMOD/jbrowse-components/discussions/2729
305 and https://github.com/GMOD/jbrowse-components/blob/main/plugins/svg/src/SvgFeatureRenderer/configSchema.ts#L41 --> 309 and https://github.com/GMOD/jbrowse-components/blob/main/plugins/svg/src/SvgFeatureRenderer/configSchema.ts#L41 -->