Mercurial > repos > fubar > jbrowse2

diff test-data/merlin_tab.maf @ 86:0fae1d68347f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit f09abc1f5ef8d261dff2d1b0063fff99a1b25f93
author fubar
date Wed, 10 Apr 2024 06:08:39 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/merlin_tab.maf	Wed Apr 10 06:08:39 2024 +0000
@@ -0,0 +1,37 @@
+##maf	version=1	scoring=lastz.v1.04.22
+#	lastz.v1.04.22	--strand=both	--ambiguous=iupac	--traceback=160M	--format=maf	--action:target=multiple
+#
+#	hsp_threshold	=	3000
+#	gapped_threshold	=	3000
+#	x_drop	=	910
+#	y_drop	=	9400
+#	gap_open_penalty	=	400
+#	gap_extend_penalty	=	30
+#	A	C	G	T
+#	A	91	-114	-31	-123
+#	C	-114	100	-125	-31
+#	G	-31	-125	100	-114
+#	T	-123	-31	-114	91
+a	score=5703
+s	Merlin.Merlin	1320	60	+	172788	ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
+s	Merlin1.Merlin	0	60	+	60	ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
+
+a	score=5595
+s	Merlin.Merlin	4020	60	+	172788	ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
+s	Merlin2.Merlin	0	60	+	60	ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
+
+a	score=5667
+s	Merlin.Merlin	5220	60	+	172788	TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
+s	Merlin3.Merlin	0	60	+	60	TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
+
+a	score=5640
+s	Merlin.Merlin	7740	60	+	172788	AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
+s	Merlin4.Merlin	0	60	+	60	AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
+
+a	score=5649
+s	Merlin.Merlin	9720	60	+	172788	TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
+s	Merlin5.Merlin	0	60	+	60	TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
+
+a	score=5658
+s	Merlin.Merlin	10380	60	+	172788	ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA
+s	Merlin6.Merlin	0	60	+	60	ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA