Mercurial > repos > fubar > jbrowse2

diff jbrowse2.xml @ 132:1efcc387bef4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b76c8cc45b31e105e6bb51abc5a5728cfd3e3f99
author bgruening
date Thu, 17 Oct 2024 11:58:53 +0000
parents fbabf7498471
children cec274db51c0
line wrap: on
line diff
--- a/jbrowse2.xml	Sat Oct 12 23:11:22 2024 +0000
+++ b/jbrowse2.xml	Thu Oct 17 11:58:53 2024 +0000
@@ -666,11 +666,16 @@
                     <has_archive_member path="merlinlastz.maf_6.sorted.bed.gz.tbi"/>
                     <has_archive_member path="merlin.blastxml_7.gz"/>
                     <has_archive_member path="dm3test.cool_9.hic"/>
-                    <has_archive_member path="peach-grape-map.paf_10.pif.gz"/>
-                    <has_archive_member path="peach-grape-map.paf_10.pif.gz.tbi"/>
+                    <has_archive_member path="peach-grape-map.paf_10"/>
                     <has_archive_member path="arabgrapepeach.paf_11"/>
-                    <has_archive_member path="arabgrapepeach.paf_11.pif.gz"/>
-                    <has_archive_member path="arabgrapepeach.paf_11.pif.gz.tbi"/>
+                    <has_archive_member path="Merlin.fa.gz.fai"/>
+                    <has_archive_member path="dm3.fa.fa.gz.fai"/>
+                    <has_archive_member path="Ppersica1.fa.fa.gz"/>
+                    <has_archive_member path="Ppersica1.fa.fa.gz.fai"/>
+                    <has_archive_member path="Ppersica1.fa.fa.gz.gzi"/>
+                    <has_archive_member path="Vvinifera1.fa.fa.gz.fai"/>
+                    <has_archive_member path="Vvinifera1.fa.fa.gz"/>
+                    <has_archive_member path="Vvinifera1.fa.fa.gz.gzi"/>
                     <has_archive_member path="Merlin.fa.gz.fai"/>
                     <has_archive_member path="dm3.fa.fa.gz.fai"/>
                     <has_archive_member path="Ppersica1.fa.fa.gz"/>
@@ -680,9 +685,7 @@
                     <has_archive_member path="Vvinifera1.fa.fa.gz"/>
                     <has_archive_member path="Vvinifera1.fa.fa.gz.gzi"/>
                     <has_archive_member path="config.json">
-                        <has_json_property_with_text property="type" text="PairwiseIndexedPAFAdapter"/>
-                        <has_json_property_with_text property="uri" text="peach-grape-map.paf_10.pif.gz.tbi"/>
-                        <has_json_property_with_text property="uri" text="peach-grape-map.paf_10.pif.gz"/>
+                        <has_json_property_with_text property="uri" text="Vvinifera1.fa.fa.gz.fai"/>
                     </has_archive_member>
                 </assert_contents>
             </output>