Mercurial > repos > fubar > jbrowse2
diff jbrowse2.xml @ 23:39b717d934a8 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit be2268f4c11d54bdd44789dd88dd9017cad27887-dirty
| author | fubar |
|---|---|
| date | Sat, 03 Feb 2024 10:17:27 +0000 |
| parents | 2ddd41a0c2d5 |
| children | 4ff1ed2065cc |
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--- a/jbrowse2.xml Thu Feb 01 01:58:58 2024 +0000 +++ b/jbrowse2.xml Sat Feb 03 10:17:27 2024 +0000 @@ -1,4 +1,4 @@ - <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@_3" profile="22.05"> + <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@_4" profile="22.05"> <description>genome browser</description> <macros> <import>macros.xml</import> @@ -173,6 +173,9 @@ #else if str($track.data_format.data_format_select) == "hic": <hic> </hic> + #else if str($track.data_format.data_format_select) == "cool": + <cool> + </cool> #else if str($track.data_format.data_format_select) == "sparql": <label>${track.data_format.label}</label> <sparql> @@ -231,6 +234,7 @@ <option value="pileup">BAM Pileup track</option> <option value="wiggle">BigWig track</option> <option value="blast">Blast XML track - converted to GFF</option> + <option value="cool">cool/mcool/scool data in hdf5 data</option> <option value="cram">CRAM</option> <option value="gene_calls" selected="true">GFF/GFF3/BED feature track</option> <option value="hic">HiC (compressed binary) track. Existing cool format must be converted to binary hic - hic_matrix will NOT work.</option> @@ -315,7 +319,10 @@ <expand macro="input_conditional" label="HiC data" format="hic" /> <expand macro="track_visibility" /> </when> - + <when value="cool"> + <expand macro="input_conditional" label="HiC data in cool/mcool/scool format" format="cool,mcool,scool" /> + <expand macro="track_visibility" /> + </when> <when value="sparql"> <param type="text" label="SPARQL Server URL" name="url" /> <param type="text" label="Track Label" name="label" value="SPARQL Genes" />