Mercurial > repos > fubar > jbrowse2

diff jbrowse2.py @ 47:3e53204c2419 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty
author fubar
date Wed, 06 Mar 2024 00:23:02 +0000
parents 4181e97c70a7
children 460d5b6c5d98
line wrap: on
line diff
--- a/jbrowse2.py	Mon Mar 04 09:47:19 2024 +0000
+++ b/jbrowse2.py	Wed Mar 06 00:23:02 2024 +0000
@@ -1086,9 +1086,9 @@
         for i, gname in enumerate(pgnames):
             if len(gname.split()) > 1:
                 gname = gname.split()[0]
+                passnames.append(gname)
                 # trouble from spacey names in command lines avoidance
                 if gname not in self.genome_names:
-                    passnames.append(gname)
                     # ignore if already there - eg for duplicates among pafs.
                     asstrack = self.make_assembly(pgpaths[i], gname)
                     self.genome_names.append(gname)