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diff readme.rst @ 46:4181e97c70a7 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a
author fubar
date Mon, 04 Mar 2024 09:47:19 +0000
parents fb6cc7bc24df
children f350467f9433
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--- a/readme.rst	Fri Mar 01 05:15:41 2024 +0000
+++ b/readme.rst	Mon Mar 04 09:47:19 2024 +0000
@@ -1,7 +1,19 @@
 JBrowse2 in Galaxy
 ==================
 
-Added Feb 3: cool/mcool -> hic 
+Added Mar 3:
+- optional tracks at last for JB2
+    - dotted noodles from optional inputs now ignored without harm
+- autogenJB2.
+    - Takes a collection of bam/vcf etc and turns them into tracks in a normal JB2 history item.
+    - Uses the JbrowseConnector, but the XML tool drives it from the contents of the collection.
+    - Collection can be built from any source or with optional noodles in a WF
+    - Produces a JB2 with all available tracks.
+    - Argparse command line with repeats for tracks and references
+        - so works outside Galaxy to process directories or s3 buckets.
+
+
+Added Feb 3: cool/mcool -> hic
 
 .. image:: dm4_in_jb2.png