Mercurial > repos > fubar > jbrowse2

diff x/config.json @ 125:49f3d3878413 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author fubar
date Sat, 05 Oct 2024 23:58:05 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/x/config.json	Sat Oct 05 23:58:05 2024 +0000
@@ -0,0 +1,132 @@
+{
+  "configuration": {
+    "disableAnalytics": false,
+    "theme": {
+      "palette": {
+        "primary": {
+          "main": "#0d233f"
+        },
+        "secondary": {
+          "main": "#721e63"
+        },
+        "tertiary": {
+          "main": "#135560"
+        },
+        "quaternary": {
+          "main": "#ffb11d"
+        }
+      },
+      "typography": {
+        "fontSize": 10
+      }
+    }
+  },
+  "defaultSession": {
+    "name": "New JBrowse2 session",
+    "views": [
+      {
+        "type": "LinearGenomeView",
+        "offsetPx": 0,
+        "bpPerPx": 50,
+        "minimized": false,
+        "tracks": [
+          {
+            "type": "QuantitativeTrack",
+            "configuration": "me.r.l.i-n.bw_0",
+            "displays": [
+              {
+                "type": "LinearWiggleDisplay",
+                "displayId": "me.r.l.i-n.bw_0-LinearWiggleDisplay",
+                "color": "#135560",
+                "autoscale": "globalsd",
+                "resolution": 1,
+                "summaryScoreMode": "whiskers",
+                "filled": false,
+                "scaleType": "linear",
+                "displayCrossHatches": false,
+                "configuration": "me.r.l.i-n.bw_0-LinearWiggleDisplay"
+              }
+            ]
+          }
+        ],
+        "displayedRegions": [
+          {
+            "reversed": false,
+            "assemblyName": "merlin.fa",
+            "refName": "Merlin",
+            "start": 0,
+            "end": 172788
+          }
+        ]
+      }
+    ]
+  },
+  "tracks": [
+    {
+      "type": "QuantitativeTrack",
+      "trackId": "me.r.l.i-n.bw_0",
+      "name": "me.r.l.i-n.bw_0",
+      "category": [
+        "Default"
+      ],
+      "assemblyNames": [
+        "merlin.fa"
+      ],
+      "adapter": {
+        "type": "BigWigAdapter",
+        "bigWigLocation": {
+          "uri": "me.r.l.i-n.bw_0"
+        }
+      },
+      "displays": [
+        {
+          "type": "LinearWiggleDisplay",
+          "displayId": "me.r.l.i-n.bw_0-LinearWiggleDisplay"
+        }
+      ],
+      "style": {
+        "type": "LinearWiggleDisplay",
+        "displayId": "me.r.l.i-n.bw_0-LinearWiggleDisplay",
+        "color": "#135560",
+        "autoscale": "globalsd",
+        "resolution": 1,
+        "summaryScoreMode": "whiskers",
+        "filled": false,
+        "scaleType": "linear",
+        "displayCrossHatches": false,
+        "configuration": "me.r.l.i-n.bw_0-LinearWiggleDisplay"
+      }
+    }
+  ],
+  "assemblies": [
+    {
+      "name": "merlin.fa",
+      "sequence": {
+        "type": "ReferenceSequenceTrack",
+        "trackId": "merlin.fa",
+        "adapter": {
+          "type": "BgzipFastaAdapter",
+          "fastaLocation": {
+            "uri": "merlin.fa.fa.gz"
+          },
+          "faiLocation": {
+            "uri": "merlin.fa.fa.gz.fai"
+          },
+          "gziLocation": {
+            "uri": "merlin.fa.fa.gz.gzi"
+          }
+        }
+      },
+      "displays": [
+        {
+          "type": "LinearReferenceSequenceDisplay",
+          "displayId": "merlin.fa-LinearReferenceSequenceDisplay"
+        },
+        {
+          "type": "LinearGCContentDisplay",
+          "displayId": "merlin.fa-LinearGCContentDisplay"
+        }
+      ]
+    }
+  ]
+}
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