Mercurial > repos > fubar > jbrowse2
diff x/static/js/8009.a65f1b78.chunk.js.map @ 125:49f3d3878413 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
| author | fubar |
|---|---|
| date | Sat, 05 Oct 2024 23:58:05 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/x/static/js/8009.a65f1b78.chunk.js.map Sat Oct 05 23:58:05 2024 +0000 @@ -0,0 +1,1 @@ 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client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M3 17.25V21h3.75L17.81 9.94l-3.75-3.75zM20.71 7.04c.39-.39.39-1.02 0-1.41l-2.34-2.34a.996.996 0 0 0-1.41 0l-1.83 1.83 3.75 3.75z\"\n}), 'Create');","import React from 'react'\nimport { observer } from 'mobx-react'\nimport {\n IconButton,\n Table,\n TableBody,\n TableCell,\n TableContainer,\n TableHead,\n TableRow,\n Paper,\n} from '@mui/material'\nimport {\n readConfObject,\n AnyConfigurationModel,\n} from '@jbrowse/core/configuration'\n\nimport CreateIcon from '@mui/icons-material/Create'\nimport DeleteIcon from '@mui/icons-material/Delete'\n\nconst AssemblyTable = observer(function ({\n rootModel,\n setIsAssemblyBeingEdited,\n setAssemblyBeingEdited,\n}: {\n rootModel: {\n jbrowse: {\n removeAssemblyConf: (arg: string) => void\n assemblies: AnyConfigurationModel[]\n }\n }\n setIsAssemblyBeingEdited(arg: boolean): void\n setAssemblyBeingEdited(arg: AnyConfigurationModel): void\n}) {\n function removeAssembly(name: string) {\n rootModel.jbrowse.removeAssemblyConf(name)\n }\n\n const { assemblies } = rootModel.jbrowse\n\n return (\n <TableContainer component={Paper}>\n <Table>\n <TableHead>\n <TableRow>\n <TableCell>Name</TableCell>\n <TableCell>Display name</TableCell>\n <TableCell>Aliases</TableCell>\n <TableCell>Actions</TableCell>\n </TableRow>\n </TableHead>\n <TableBody>\n {assemblies.map(assembly => {\n const name = readConfObject(assembly, 'name')\n const displayName = readConfObject(assembly, 'displayName')\n const aliases = readConfObject(assembly, 'aliases')\n return (\n <TableRow key={name}>\n <TableCell>{name}</TableCell>\n <TableCell>{displayName}</TableCell>\n <TableCell>{aliases ? aliases.toString() : ''}</TableCell>\n <TableCell>\n <IconButton\n data-testid={`${name}-edit`}\n onClick={() => {\n setIsAssemblyBeingEdited(true)\n setAssemblyBeingEdited(assembly)\n }}\n >\n <CreateIcon color=\"primary\" />\n </IconButton>\n <IconButton\n data-testid={`${name}-delete`}\n onClick={() => {\n removeAssembly(name)\n }}\n >\n <DeleteIcon color=\"error\" />\n </IconButton>\n </TableCell>\n </TableRow>\n )\n })}\n </TableBody>\n </Table>\n </TableContainer>\n )\n})\n\nexport default AssemblyTable\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { Button, Grid, MenuItem, Paper, TextField } from '@mui/material'\nimport { FileSelector } from '@jbrowse/core/ui'\nimport { AbstractRootModel, FileLocation } from '@jbrowse/core/util/types'\n\n// icons\nimport AddIcon from '@mui/icons-material/Add'\n\nconst AdapterSelector = observer(function ({\n adapterSelection,\n setAdapterSelection,\n adapterTypes,\n}: {\n adapterSelection: string\n setAdapterSelection: (arg: string) => void\n adapterTypes: readonly string[]\n}) {\n return (\n <TextField\n value={adapterSelection}\n label=\"Type\"\n select\n helperText=\"Type of adapter to use\"\n fullWidth\n onChange={event => {\n setAdapterSelection(event.target.value)\n }}\n >\n {adapterTypes.map(str => (\n <MenuItem key={str} value={str}>\n {str}\n </MenuItem>\n ))}\n </TextField>\n )\n})\n\nconst AdapterInput = observer(function ({\n adapterSelection,\n fastaLocation,\n faiLocation,\n gziLocation,\n twoBitLocation,\n chromSizesLocation,\n setFaiLocation,\n setGziLocation,\n setTwoBitLocation,\n setFastaLocation,\n setChromSizesLocation,\n}: {\n adapterSelection: string\n fastaLocation: FileLocation\n faiLocation: FileLocation\n gziLocation: FileLocation\n twoBitLocation: FileLocation\n chromSizesLocation: FileLocation\n setGziLocation: (arg: FileLocation) => void\n setTwoBitLocation: (arg: FileLocation) => void\n setChromSizesLocation: (arg: FileLocation) => void\n setFastaLocation: (arg: FileLocation) => void\n setFaiLocation: (arg: FileLocation) => void\n}) {\n if (\n adapterSelection === 'IndexedFastaAdapter' ||\n adapterSelection === 'BgzipFastaAdapter'\n ) {\n return (\n <Grid container spacing={2}>\n <Grid item>\n <FileSelector\n name=\"fastaLocation\"\n location={fastaLocation}\n setLocation={loc => {\n setFastaLocation(loc)\n }}\n />\n </Grid>\n <Grid item>\n <FileSelector\n name=\"faiLocation\"\n location={faiLocation}\n setLocation={loc => {\n setFaiLocation(loc)\n }}\n />\n </Grid>\n {adapterSelection === 'BgzipFastaAdapter' ? (\n <Grid item>\n <FileSelector\n name=\"gziLocation\"\n location={gziLocation}\n setLocation={loc => {\n setGziLocation(loc)\n }}\n />\n </Grid>\n ) : null}\n </Grid>\n )\n }\n\n if (adapterSelection === 'TwoBitAdapter') {\n return (\n <Grid container spacing={2}>\n <Grid item>\n <FileSelector\n name=\"twoBitLocation\"\n location={twoBitLocation}\n setLocation={loc => {\n setTwoBitLocation(loc)\n }}\n />\n </Grid>\n <Grid item>\n <FileSelector\n name=\"chromSizesLocation (optional, can be added to speed up loading 2bit files with many contigs)\"\n location={chromSizesLocation}\n setLocation={loc => {\n setChromSizesLocation(loc)\n }}\n />\n </Grid>\n </Grid>\n )\n }\n\n return null\n})\n\nconst blank = { uri: '' } as FileLocation\n\nconst adapterTypes = [\n 'IndexedFastaAdapter',\n 'BgzipFastaAdapter',\n 'TwoBitAdapter',\n] as const\n\nconst AssemblyAddForm = observer(function ({\n rootModel,\n setFormOpen,\n}: {\n rootModel: AbstractRootModel\n setFormOpen: (arg: boolean) => void\n}) {\n const [assemblyName, setAssemblyName] = useState('')\n const [assemblyDisplayName, setAssemblyDisplayName] = useState('')\n const [adapterSelection, setAdapterSelection] = useState(\n adapterTypes[0] as string,\n )\n const [fastaLocation, setFastaLocation] = useState(blank)\n const [faiLocation, setFaiLocation] = useState(blank)\n const [gziLocation, setGziLocation] = useState(blank)\n const [twoBitLocation, setTwoBitLocation] = useState(blank)\n const [chromSizesLocation, setChromSizesLocation] = useState(blank)\n\n function createAssembly() {\n if (assemblyName === '') {\n rootModel.session?.notify(\"Can't create an assembly without a name\")\n } else {\n setFormOpen(false)\n let newAssembly: Record<string, unknown>\n if (adapterSelection === 'IndexedFastaAdapter') {\n newAssembly = {\n name: assemblyName,\n displayName: assemblyDisplayName,\n sequence: {\n adapter: {\n type: 'IndexedFastaAdapter',\n fastaLocation,\n faiLocation,\n },\n },\n }\n } else if (adapterSelection === 'BgzipFastaAdapter') {\n newAssembly = {\n name: assemblyName,\n displayName: assemblyDisplayName,\n sequence: {\n adapter: {\n type: 'BgzipFastaAdapter',\n fastaLocation,\n faiLocation,\n gziLocation,\n },\n },\n }\n } else if (adapterSelection === 'TwoBitAdapter') {\n newAssembly = {\n name: assemblyName,\n displayName: assemblyDisplayName,\n sequence: {\n adapter: {\n type: 'TwoBitAdapter',\n twoBitLocation,\n chromSizesLocation,\n },\n },\n }\n } else {\n throw new Error(`unknown ${adapterSelection}`)\n }\n rootModel.jbrowse.addAssemblyConf(newAssembly)\n rootModel.session?.notify(\n `Successfully added ${assemblyName} assembly to JBrowse 2`,\n 'success',\n )\n }\n }\n\n return (\n <div>\n <Paper>\n <TextField\n id=\"assembly-name\"\n inputProps={{ 'data-testid': 'assembly-name' }}\n label=\"Assembly name\"\n helperText=\"The assembly name e.g. hg38\"\n variant=\"outlined\"\n value={assemblyName}\n onChange={event => {\n setAssemblyName(event.target.value)\n }}\n />\n <TextField\n id=\"assembly-name\"\n inputProps={{ 'data-testid': 'assembly-display-name' }}\n label=\"Assembly display name\"\n helperText='A human readable display name for the assembly e.g. \"Homo sapiens (hg38)\"'\n variant=\"outlined\"\n value={assemblyDisplayName}\n onChange={event => {\n setAssemblyDisplayName(event.target.value)\n }}\n />\n <AdapterSelector\n adapterSelection={adapterSelection}\n adapterTypes={adapterTypes}\n setAdapterSelection={setAdapterSelection}\n />\n <AdapterInput\n adapterSelection={adapterSelection}\n fastaLocation={fastaLocation}\n faiLocation={faiLocation}\n gziLocation={gziLocation}\n twoBitLocation={twoBitLocation}\n chromSizesLocation={chromSizesLocation}\n setFaiLocation={setFaiLocation}\n setGziLocation={setGziLocation}\n setTwoBitLocation={setTwoBitLocation}\n setFastaLocation={setFastaLocation}\n setChromSizesLocation={setChromSizesLocation}\n />\n </Paper>\n <Button\n variant=\"contained\"\n color=\"secondary\"\n startIcon={<AddIcon />}\n onClick={createAssembly}\n >\n Create new assembly\n </Button>\n </div>\n )\n})\n\nexport default AssemblyAddForm\n","import React from 'react'\nimport { observer } from 'mobx-react'\nimport { ConfigurationEditor } from '@jbrowse/plugin-config'\nimport { makeStyles } from 'tss-react/mui'\nimport { AnyConfigurationModel } from '@jbrowse/core/configuration'\n\nconst useStyles = makeStyles()({\n container: {\n overflow: 'auto',\n maxHeight: 600,\n },\n})\nconst AssemblyEditor = observer(function ({\n assembly,\n}: {\n assembly?: AnyConfigurationModel\n}) {\n const { classes } = useStyles()\n return (\n <div className={classes.container}>\n {assembly ? (\n <ConfigurationEditor model={{ target: assembly }} />\n ) : (\n <div>No assembly</div>\n )}\n </div>\n )\n})\n\nexport default AssemblyEditor\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { AnyConfigurationModel } from '@jbrowse/core/configuration'\nimport { Button, DialogActions, DialogContent } from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\n\n// icons\nimport AddIcon from '@mui/icons-material/Add'\n\n// locals\nimport AssemblyTable from './AssemblyTable'\nimport AssemblyAddForm from './AssemblyAddForm'\nimport AssemblyEditor from './AssemblyEditor'\n\nconst AssemblyManager = observer(function ({\n rootModel,\n onClose,\n}: {\n rootModel: any\n onClose: (arg: boolean) => void\n}) {\n const [isFormOpen, setFormOpen] = useState(false)\n const [isAssemblyBeingEdited, setIsAssemblyBeingEdited] = useState(false)\n const [assemblyBeingEdited, setAssemblyBeingEdited] =\n useState<AnyConfigurationModel>()\n\n const showAssemblyTable = !isFormOpen && !isAssemblyBeingEdited\n\n return (\n <Dialog\n open\n onClose={() => {\n onClose(false)\n }}\n title=\"Assembly manager\"\n >\n <DialogContent>\n {showAssemblyTable ? (\n <AssemblyTable\n rootModel={rootModel}\n setIsAssemblyBeingEdited={setIsAssemblyBeingEdited}\n setAssemblyBeingEdited={setAssemblyBeingEdited}\n />\n ) : null}\n {isAssemblyBeingEdited ? (\n <AssemblyEditor assembly={assemblyBeingEdited} />\n ) : null}\n {isFormOpen ? (\n <AssemblyAddForm rootModel={rootModel} setFormOpen={setFormOpen} />\n ) : null}\n </DialogContent>\n <DialogActions>\n {isFormOpen ? (\n <Button\n variant=\"contained\"\n onClick={() => {\n setFormOpen(false)\n }}\n >\n Back\n </Button>\n ) : null}\n {isAssemblyBeingEdited ? (\n <Button\n variant=\"contained\"\n onClick={() => {\n setIsAssemblyBeingEdited(false)\n }}\n >\n Back\n </Button>\n ) : null}\n {showAssemblyTable ? (\n <>\n <Button\n color=\"secondary\"\n variant=\"contained\"\n onClick={() => {\n onClose(false)\n }}\n >\n Close\n </Button>\n <Button\n variant=\"contained\"\n startIcon={<AddIcon />}\n onClick={() => {\n setFormOpen(true)\n }}\n >\n Add new assembly\n </Button>\n </>\n ) : null}\n </DialogActions>\n </Dialog>\n )\n})\n\nexport default AssemblyManager\n","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M6 19c0 1.1.9 2 2 2h8c1.1 0 2-.9 2-2V7H6zM19 4h-3.5l-1-1h-5l-1 1H5v2h14z\"\n}), 'Delete');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport TableContext from \"./TableContext.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getTableUtilityClass } from \"./tableClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n stickyHeader\n } = ownerState;\n const slots = {\n root: ['root', stickyHeader && 'stickyHeader']\n };\n return composeClasses(slots, getTableUtilityClass, classes);\n};\nconst TableRoot = styled('table', {\n name: 'MuiTable',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.stickyHeader && styles.stickyHeader];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'table',\n width: '100%',\n borderCollapse: 'collapse',\n borderSpacing: 0,\n '& caption': {\n ...theme.typography.body2,\n padding: theme.spacing(2),\n color: (theme.vars || theme).palette.text.secondary,\n textAlign: 'left',\n captionSide: 'bottom'\n },\n variants: [{\n props: ({\n ownerState\n }) => ownerState.stickyHeader,\n style: {\n borderCollapse: 'separate'\n }\n }]\n})));\nconst defaultComponent = 'table';\nconst Table = /*#__PURE__*/React.forwardRef(function Table(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTable'\n });\n const {\n className,\n component = defaultComponent,\n padding = 'normal',\n size = 'medium',\n stickyHeader = false,\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n padding,\n size,\n stickyHeader\n };\n const classes = useUtilityClasses(ownerState);\n const table = React.useMemo(() => ({\n padding,\n size,\n stickyHeader\n }), [padding, size, stickyHeader]);\n return /*#__PURE__*/_jsx(TableContext.Provider, {\n value: table,\n children: /*#__PURE__*/_jsx(TableRoot, {\n as: component,\n role: component === defaultComponent ? null : 'table',\n ref: ref,\n className: clsx(classes.root, className),\n ownerState: ownerState,\n ...other\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Table.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the table, normally `TableHead` and `TableBody`.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * Allows TableCells to inherit padding of the Table.\n * @default 'normal'\n */\n padding: PropTypes.oneOf(['checkbox', 'none', 'normal']),\n /**\n * Allows TableCells to inherit size of the Table.\n * @default 'medium'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n /**\n * Set the header sticky.\n * @default false\n */\n stickyHeader: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default Table;","'use client';\n\nimport * as React from 'react';\n\n/**\n * @ignore - internal component.\n */\nconst TableContext = /*#__PURE__*/React.createContext();\nif (process.env.NODE_ENV !== 'production') {\n TableContext.displayName = 'TableContext';\n}\nexport default TableContext;","import * as React from 'react';\n\n/**\n * @ignore - internal component.\n */\nconst Tablelvl2Context = /*#__PURE__*/React.createContext();\nif (process.env.NODE_ENV !== 'production') {\n Tablelvl2Context.displayName = 'Tablelvl2Context';\n}\nexport default Tablelvl2Context;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableUtilityClass(slot) {\n return generateUtilityClass('MuiTable', slot);\n}\nconst tableClasses = generateUtilityClasses('MuiTable', ['root', 'stickyHeader']);\nexport default tableClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport Tablelvl2Context from \"../Table/Tablelvl2Context.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getTableBodyUtilityClass } from \"./tableBodyClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getTableBodyUtilityClass, classes);\n};\nconst TableBodyRoot = styled('tbody', {\n name: 'MuiTableBody',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n display: 'table-row-group'\n});\nconst tablelvl2 = {\n variant: 'body'\n};\nconst defaultComponent = 'tbody';\nconst TableBody = /*#__PURE__*/React.forwardRef(function TableBody(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTableBody'\n });\n const {\n className,\n component = defaultComponent,\n ...other\n } = props;\n const ownerState = {\n ...props,\n component\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(Tablelvl2Context.Provider, {\n value: tablelvl2,\n children: /*#__PURE__*/_jsx(TableBodyRoot, {\n className: clsx(classes.root, className),\n as: component,\n ref: ref,\n role: component === defaultComponent ? null : 'rowgroup',\n ownerState: ownerState,\n ...other\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? TableBody.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component, normally `TableRow`.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default TableBody;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableBodyUtilityClass(slot) {\n return generateUtilityClass('MuiTableBody', slot);\n}\nconst tableBodyClasses = generateUtilityClasses('MuiTableBody', ['root']);\nexport default tableBodyClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { darken, alpha, lighten } from '@mui/system/colorManipulator';\nimport capitalize from \"../utils/capitalize.js\";\nimport TableContext from \"../Table/TableContext.js\";\nimport Tablelvl2Context from \"../Table/Tablelvl2Context.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport tableCellClasses, { getTableCellUtilityClass } from \"./tableCellClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n align,\n padding,\n size,\n stickyHeader\n } = ownerState;\n const slots = {\n root: ['root', variant, stickyHeader && 'stickyHeader', align !== 'inherit' && `align${capitalize(align)}`, padding !== 'normal' && `padding${capitalize(padding)}`, `size${capitalize(size)}`]\n };\n return composeClasses(slots, getTableCellUtilityClass, classes);\n};\nconst TableCellRoot = styled('td', {\n name: 'MuiTableCell',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`size${capitalize(ownerState.size)}`], ownerState.padding !== 'normal' && styles[`padding${capitalize(ownerState.padding)}`], ownerState.align !== 'inherit' && styles[`align${capitalize(ownerState.align)}`], ownerState.stickyHeader && styles.stickyHeader];\n }\n})(memoTheme(({\n theme\n}) => ({\n ...theme.typography.body2,\n display: 'table-cell',\n verticalAlign: 'inherit',\n // Workaround for a rendering bug with spanned columns in Chrome 62.0.\n // Removes the alpha (sets it to 1), and lightens or darkens the theme color.\n borderBottom: theme.vars ? `1px solid ${theme.vars.palette.TableCell.border}` : `1px solid\n ${theme.palette.mode === 'light' ? lighten(alpha(theme.palette.divider, 1), 0.88) : darken(alpha(theme.palette.divider, 1), 0.68)}`,\n textAlign: 'left',\n padding: 16,\n variants: [{\n props: {\n variant: 'head'\n },\n style: {\n color: (theme.vars || theme).palette.text.primary,\n lineHeight: theme.typography.pxToRem(24),\n fontWeight: theme.typography.fontWeightMedium\n }\n }, {\n props: {\n variant: 'body'\n },\n style: {\n color: (theme.vars || theme).palette.text.primary\n }\n }, {\n props: {\n variant: 'footer'\n },\n style: {\n color: (theme.vars || theme).palette.text.secondary,\n lineHeight: theme.typography.pxToRem(21),\n fontSize: theme.typography.pxToRem(12)\n }\n }, {\n props: {\n size: 'small'\n },\n style: {\n padding: '6px 16px',\n [`&.${tableCellClasses.paddingCheckbox}`]: {\n width: 24,\n // prevent the checkbox column from growing\n padding: '0 12px 0 16px',\n '& > *': {\n padding: 0\n }\n }\n }\n }, {\n props: {\n padding: 'checkbox'\n },\n style: {\n width: 48,\n // prevent the checkbox column from growing\n padding: '0 0 0 4px'\n }\n }, {\n props: {\n padding: 'none'\n },\n style: {\n padding: 0\n }\n }, {\n props: {\n align: 'left'\n },\n style: {\n textAlign: 'left'\n }\n }, {\n props: {\n align: 'center'\n },\n style: {\n textAlign: 'center'\n }\n }, {\n props: {\n align: 'right'\n },\n style: {\n textAlign: 'right',\n flexDirection: 'row-reverse'\n }\n }, {\n props: {\n align: 'justify'\n },\n style: {\n textAlign: 'justify'\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.stickyHeader,\n style: {\n position: 'sticky',\n top: 0,\n zIndex: 2,\n backgroundColor: (theme.vars || theme).palette.background.default\n }\n }]\n})));\n\n/**\n * The component renders a `<th>` element when the parent context is a header\n * or otherwise a `<td>` element.\n */\nconst TableCell = /*#__PURE__*/React.forwardRef(function TableCell(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTableCell'\n });\n const {\n align = 'inherit',\n className,\n component: componentProp,\n padding: paddingProp,\n scope: scopeProp,\n size: sizeProp,\n sortDirection,\n variant: variantProp,\n ...other\n } = props;\n const table = React.useContext(TableContext);\n const tablelvl2 = React.useContext(Tablelvl2Context);\n const isHeadCell = tablelvl2 && tablelvl2.variant === 'head';\n let component;\n if (componentProp) {\n component = componentProp;\n } else {\n component = isHeadCell ? 'th' : 'td';\n }\n let scope = scopeProp;\n // scope is not a valid attribute for <td/> elements.\n // source: https://html.spec.whatwg.org/multipage/tables.html#the-td-element\n if (component === 'td') {\n scope = undefined;\n } else if (!scope && isHeadCell) {\n scope = 'col';\n }\n const variant = variantProp || tablelvl2 && tablelvl2.variant;\n const ownerState = {\n ...props,\n align,\n component,\n padding: paddingProp || (table && table.padding ? table.padding : 'normal'),\n size: sizeProp || (table && table.size ? table.size : 'medium'),\n sortDirection,\n stickyHeader: variant === 'head' && table && table.stickyHeader,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n let ariaSort = null;\n if (sortDirection) {\n ariaSort = sortDirection === 'asc' ? 'ascending' : 'descending';\n }\n return /*#__PURE__*/_jsx(TableCellRoot, {\n as: component,\n ref: ref,\n className: clsx(classes.root, className),\n \"aria-sort\": ariaSort,\n scope: scope,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? TableCell.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Set the text-align on the table cell content.\n *\n * Monetary or generally number fields **should be right aligned** as that allows\n * you to add them up quickly in your head without having to worry about decimals.\n * @default 'inherit'\n */\n align: PropTypes.oneOf(['center', 'inherit', 'justify', 'left', 'right']),\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * Sets the padding applied to the cell.\n * The prop defaults to the value (`'default'`) inherited from the parent Table component.\n */\n padding: PropTypes.oneOf(['checkbox', 'none', 'normal']),\n /**\n * Set scope attribute.\n */\n scope: PropTypes.string,\n /**\n * Specify the size of the cell.\n * The prop defaults to the value (`'medium'`) inherited from the parent Table component.\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n /**\n * Set aria-sort direction.\n */\n sortDirection: PropTypes.oneOf(['asc', 'desc', false]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * Specify the cell type.\n * The prop defaults to the value inherited from the parent TableHead, TableBody, or TableFooter components.\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['body', 'footer', 'head']), PropTypes.string])\n} : void 0;\nexport default TableCell;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableCellUtilityClass(slot) {\n return generateUtilityClass('MuiTableCell', slot);\n}\nconst tableCellClasses = generateUtilityClasses('MuiTableCell', ['root', 'head', 'body', 'footer', 'sizeSmall', 'sizeMedium', 'paddingCheckbox', 'paddingNone', 'alignLeft', 'alignCenter', 'alignRight', 'alignJustify', 'stickyHeader']);\nexport default tableCellClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getTableContainerUtilityClass } from \"./tableContainerClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getTableContainerUtilityClass, classes);\n};\nconst TableContainerRoot = styled('div', {\n name: 'MuiTableContainer',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n width: '100%',\n overflowX: 'auto'\n});\nconst TableContainer = /*#__PURE__*/React.forwardRef(function TableContainer(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTableContainer'\n });\n const {\n className,\n component = 'div',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(TableContainerRoot, {\n ref: ref,\n as: component,\n className: clsx(classes.root, className),\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? TableContainer.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component, normally `Table`.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default TableContainer;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableContainerUtilityClass(slot) {\n return generateUtilityClass('MuiTableContainer', slot);\n}\nconst tableContainerClasses = generateUtilityClasses('MuiTableContainer', ['root']);\nexport default tableContainerClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport Tablelvl2Context from \"../Table/Tablelvl2Context.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getTableHeadUtilityClass } from \"./tableHeadClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getTableHeadUtilityClass, classes);\n};\nconst TableHeadRoot = styled('thead', {\n name: 'MuiTableHead',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n display: 'table-header-group'\n});\nconst tablelvl2 = {\n variant: 'head'\n};\nconst defaultComponent = 'thead';\nconst TableHead = /*#__PURE__*/React.forwardRef(function TableHead(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTableHead'\n });\n const {\n className,\n component = defaultComponent,\n ...other\n } = props;\n const ownerState = {\n ...props,\n component\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(Tablelvl2Context.Provider, {\n value: tablelvl2,\n children: /*#__PURE__*/_jsx(TableHeadRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n role: component === defaultComponent ? null : 'rowgroup',\n ownerState: ownerState,\n ...other\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? TableHead.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component, normally `TableRow`.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default TableHead;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableHeadUtilityClass(slot) {\n return generateUtilityClass('MuiTableHead', slot);\n}\nconst tableHeadClasses = generateUtilityClasses('MuiTableHead', ['root']);\nexport default tableHeadClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { alpha } from '@mui/system/colorManipulator';\nimport Tablelvl2Context from \"../Table/Tablelvl2Context.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport tableRowClasses, { getTableRowUtilityClass } from \"./tableRowClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n selected,\n hover,\n head,\n footer\n } = ownerState;\n const slots = {\n root: ['root', selected && 'selected', hover && 'hover', head && 'head', footer && 'footer']\n };\n return composeClasses(slots, getTableRowUtilityClass, classes);\n};\nconst TableRowRoot = styled('tr', {\n name: 'MuiTableRow',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.head && styles.head, ownerState.footer && styles.footer];\n }\n})(memoTheme(({\n theme\n}) => ({\n color: 'inherit',\n display: 'table-row',\n verticalAlign: 'middle',\n // We disable the focus ring for mouse, touch and keyboard users.\n outline: 0,\n [`&.${tableRowClasses.hover}:hover`]: {\n backgroundColor: (theme.vars || theme).palette.action.hover\n },\n [`&.${tableRowClasses.selected}`]: {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.primary.mainChannel} / ${theme.vars.palette.action.selectedOpacity})` : alpha(theme.palette.primary.main, theme.palette.action.selectedOpacity),\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.primary.mainChannel} / calc(${theme.vars.palette.action.selectedOpacity} + ${theme.vars.palette.action.hoverOpacity}))` : alpha(theme.palette.primary.main, theme.palette.action.selectedOpacity + theme.palette.action.hoverOpacity)\n }\n }\n})));\nconst defaultComponent = 'tr';\n/**\n * Will automatically set dynamic row height\n * based on the material table element parent (head, body, etc).\n */\nconst TableRow = /*#__PURE__*/React.forwardRef(function TableRow(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTableRow'\n });\n const {\n className,\n component = defaultComponent,\n hover = false,\n selected = false,\n ...other\n } = props;\n const tablelvl2 = React.useContext(Tablelvl2Context);\n const ownerState = {\n ...props,\n component,\n hover,\n selected,\n head: tablelvl2 && tablelvl2.variant === 'head',\n footer: tablelvl2 && tablelvl2.variant === 'footer'\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(TableRowRoot, {\n as: component,\n ref: ref,\n className: clsx(classes.root, className),\n role: component === defaultComponent ? null : 'row',\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? TableRow.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Should be valid `<tr>` children such as `TableCell`.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, the table row will shade on hover.\n * @default false\n */\n hover: PropTypes.bool,\n /**\n * If `true`, the table row will have the selected shading.\n * @default false\n */\n selected: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default TableRow;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableRowUtilityClass(slot) {\n return generateUtilityClass('MuiTableRow', slot);\n}\nconst tableRowClasses = generateUtilityClasses('MuiTableRow', ['root', 'selected', 'hover', 'head', 'footer']);\nexport default tableRowClasses;"],"names":["createSvgIcon","d","observer","rootModel","setIsAssemblyBeingEdited","setAssemblyBeingEdited","assemblies","jbrowse","React","TableContainer","component","Paper","Table","TableHead","TableRow","TableCell","TableBody","map","assembly","name","readConfObject","displayName","aliases","key","toString","IconButton","onClick","CreateIcon","color","removeAssemblyConf","removeAssembly","DeleteIcon","AdapterSelector","adapterSelection","setAdapterSelection","adapterTypes","TextField","value","label","select","helperText","fullWidth","onChange","event","target","str","MenuItem","AdapterInput","fastaLocation","faiLocation","gziLocation","twoBitLocation","chromSizesLocation","setFaiLocation","setGziLocation","setTwoBitLocation","setFastaLocation","setChromSizesLocation","Grid","container","spacing","item","FileSelector","location","setLocation","loc","blank","uri","setFormOpen","assemblyName","setAssemblyName","useState","assemblyDisplayName","setAssemblyDisplayName","id","inputProps","variant","Button","startIcon","AddIcon","session","notify","newAssembly","sequence","adapter","type","Error","addAssemblyConf","useStyles","makeStyles","overflow","maxHeight","classes","className","ConfigurationEditor","model","onClose","isFormOpen","isAssemblyBeingEdited","assemblyBeingEdited","showAssemblyTable","Dialog","open","title","DialogContent","AssemblyTable","AssemblyEditor","AssemblyAddForm","DialogActions","TableRoot","slot","overridesResolver","props","styles","ownerState","root","stickyHeader","theme","display","width","borderCollapse","borderSpacing","typography","body2","padding","vars","palette","text","secondary","textAlign","captionSide","variants","style","defaultComponent","inProps","ref","size","other","slots","useUtilityClasses","table","Provider","children","as","role","getTableUtilityClass","TableBodyRoot","tablelvl2","getTableBodyUtilityClass","TableCellRoot","align","verticalAlign","borderBottom","border","mode","divider","primary","lineHeight","pxToRem","fontWeight","fontWeightMedium","fontSize","paddingCheckbox","flexDirection","position","top","zIndex","backgroundColor","background","default","componentProp","paddingProp","scope","scopeProp","sizeProp","sortDirection","variantProp","isHeadCell","undefined","ariaSort","getTableCellUtilityClass","TableContainerRoot","overflowX","getTableContainerUtilityClass","TableHeadRoot","getTableHeadUtilityClass","TableRowRoot","head","footer","outline","hover","action","selected","mainChannel","selectedOpacity","main","hoverOpacity","getTableRowUtilityClass"],"sourceRoot":""} \ No newline at end of file