diff x/static/js/8880.6ae9d985.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author fubar
date Sat, 05 Oct 2024 23:58:05 +0000
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{ getFillProps } from '@jbrowse/core/util'\nimport React from 'react'\n\nconst RectBg = (props: {\n  x: number\n  y: number\n  width: number\n  height: number\n  color?: string\n}) => {\n  const { color = 'rgb(255,255,255,0.8)' } = props\n  return <rect {...props} {...getFillProps(color)} />\n}\n\nexport default RectBg\n","import React from 'react'\nimport { observer } from 'mobx-react'\n\n// locals\nimport { WiggleDisplayModel } from '../models/model'\nimport RectBg from './RectBg'\n\nconst ColorLegend = observer(function ({\n  model,\n  rowHeight,\n  labelWidth,\n  exportSVG,\n}: {\n  model: WiggleDisplayModel\n  rowHeight: number\n  labelWidth: number\n  exportSVG?: boolean\n}) {\n  const {\n    needsCustomLegend,\n    needsScalebar,\n    needsFullHeightScalebar,\n    rowHeightTooSmallForScalebar,\n    renderColorBoxes,\n    sources,\n  } = model\n  const svgFontSize = Math.min(rowHeight, 12)\n  const canDisplayLabel = rowHeight > 11\n  const colorBoxWidth = renderColorBoxes ? 15 : 0\n  const legendWidth = labelWidth + colorBoxWidth + 5\n  const svgOffset = exportSVG ? 10 : 0\n  const extraOffset =\n    svgOffset || (needsScalebar && !rowHeightTooSmallForScalebar ? 50 : 0)\n\n  return sources ? (\n    <>\n      {\n        /* 0.25 for hanging letters like g */\n        needsFullHeightScalebar ? (\n          <RectBg\n            y={0}\n            x={extraOffset}\n            width={legendWidth}\n            height={(sources.length + 0.25) * rowHeight}\n          />\n        ) : null\n      }\n      {sources.map((source, idx) => {\n        const boxHeight = Math.min(20, rowHeight)\n        return (\n          <React.Fragment key={`${source.name}-${idx}`}>\n            {needsFullHeightScalebar ? null : (\n              <RectBg\n                y={idx * rowHeight + 1}\n                x={extraOffset}\n                width={legendWidth}\n                height={boxHeight}\n              />\n            )}\n            {source.color ? (\n              <RectBg\n                y={idx * rowHeight + 1}\n                x={extraOffset}\n                width={colorBoxWidth}\n                height={needsCustomLegend ? rowHeight : boxHeight}\n                color={source.color}\n              />\n            ) : null}\n            {canDisplayLabel ? (\n              <text\n                y={idx * rowHeight + 13}\n                x={extraOffset + colorBoxWidth + 2}\n                fontSize={svgFontSize}\n              >\n                {source.name}\n              </text>\n            ) : null}\n          </React.Fragment>\n        )\n      })}\n    </>\n  ) : null\n})\n\nexport default ColorLegend\n","import React from 'react'\nimport { measureText, getContainingView } from '@jbrowse/core/util'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport { observer } from 'mobx-react'\n\n// locals\nimport { WiggleDisplayModel } from '../models/model'\nimport RectBg from './RectBg'\n\ntype LGV = LinearGenomeViewModel\n\nconst ScoreLegend = observer(({ model }: { model: WiggleDisplayModel }) => {\n  const { ticks, scaleType } = model\n  const { width } = getContainingView(model) as LGV\n  const legend = `[${ticks?.values[0]}-${ticks?.values[1]}]${scaleType === 'log' ? ' (log scale)' : ''}`\n  const len = measureText(legend, 14)\n  const padding = 25\n  const xpos = width - len - padding\n  return (\n    <>\n      <RectBg y={0} x={xpos} width={len + 6} height={16} />\n      <text y={13} x={xpos}>\n        {legend}\n      </text>\n    </>\n  )\n})\n\nexport default ScoreLegend\n","import React from 'react'\nimport { measureText, getContainingView } from '@jbrowse/core/util'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport { observer } from 'mobx-react'\n\n// locals\nimport { WiggleDisplayModel } from '../models/model'\nimport YScaleBar from '../../shared/YScaleBar'\nimport ColorLegend from './ColorLegend'\nimport ScoreLegend from './ScoreLegend'\nimport { getOffset } from './util'\n\ntype LGV = LinearGenomeViewModel\n\nconst Wrapper = observer(function ({\n  children,\n  model,\n  exportSVG,\n}: {\n  model: WiggleDisplayModel\n  children: React.ReactNode\n  exportSVG?: boolean\n}) {\n  const { height } = model\n  return exportSVG ? (\n    children\n  ) : (\n    <svg\n      style={{\n        position: 'absolute',\n        top: 0,\n        left: 0,\n        pointerEvents: 'none',\n        height,\n        width: getContainingView(model).width,\n      }}\n    >\n      {children}\n    </svg>\n  )\n})\n\nexport const YScaleBars = observer(function (props: {\n  model: WiggleDisplayModel\n  orientation?: string\n  exportSVG?: boolean\n}) {\n  const { model, orientation, exportSVG } = props\n  const {\n    stats,\n    needsCustomLegend,\n    needsFullHeightScalebar,\n    rowHeightTooSmallForScalebar,\n    rowHeight,\n    sources,\n    ticks,\n  } = model\n  const svgFontSize = Math.min(rowHeight, 12)\n  const canDisplayLabel = rowHeight > 11\n  const { width: viewWidth } = getContainingView(model) as LGV\n  const minWidth = 20\n\n  const ready = stats && sources\n  if (!ready) {\n    return null\n  }\n\n  const labelWidth = Math.max(\n    ...sources\n      .map(s => measureText(s.name, svgFontSize))\n      .map(width => (canDisplayLabel ? width : minWidth)),\n  )\n\n  return (\n    <Wrapper {...props}>\n      {needsFullHeightScalebar ? (\n        <>\n          <g transform={`translate(${!exportSVG ? getOffset(model) : 0},0)`}>\n            <YScaleBar model={model} orientation={orientation} />\n          </g>\n          <g transform={`translate(${viewWidth - labelWidth - 100},0)`}>\n            <ColorLegend\n              exportSVG={exportSVG}\n              model={model}\n              rowHeight={12}\n              labelWidth={labelWidth}\n            />\n          </g>\n        </>\n      ) : (\n        <>\n          <ColorLegend\n            exportSVG={exportSVG}\n            model={model}\n            rowHeight={model.rowHeight}\n            labelWidth={labelWidth}\n          />\n\n          {rowHeightTooSmallForScalebar || needsCustomLegend ? (\n            <ScoreLegend {...props} />\n          ) : (\n            sources.map((_source, idx) => (\n              <g\n                transform={`translate(0 ${rowHeight * idx})`}\n                key={`${JSON.stringify(ticks)}-${idx}`}\n              >\n                <YScaleBar model={model} orientation={orientation} />\n              </g>\n            ))\n          )}\n        </>\n      )}\n    </Wrapper>\n  )\n})\n\nexport default YScaleBars\n","import {\n  getContainingTrack,\n  getContainingView,\n  measureText,\n} from '@jbrowse/core/util'\nimport { WiggleDisplayModel } from '../models/model'\nimport { getConf } from '@jbrowse/core/configuration'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\n\nexport function moveUp(arr: { name: string }[], sel: string[], by = 1) {\n  const idxs = sel\n    .map(l => arr.findIndex(v => v.name === l))\n    .sort((a, b) => a - b)\n  let lastIdx = 0\n  for (const old of idxs) {\n    const idx = Math.max(lastIdx, old - by)\n    if (idx >= lastIdx) {\n      arr.splice(idx, 0, arr.splice(old, 1)[0]!)\n    }\n    lastIdx = lastIdx + 1\n  }\n\n  return arr\n}\n\nexport function moveDown(arr: { name: string }[], sel: string[], by = 1) {\n  const idxs = sel\n    .map(l => arr.findIndex(v => v.name === l))\n    .sort((a, b) => b - a)\n  let lastIdx = arr.length - 1\n  for (const old of idxs) {\n    const idx = Math.min(lastIdx, old + by)\n    if (idx <= lastIdx) {\n      arr.splice(idx, 0, arr.splice(old, 1)[0]!)\n    }\n    lastIdx = lastIdx - 1\n  }\n\n  return arr\n}\n\nconst trackLabelFontSize = 12.8\n\nexport function getOffset(model: WiggleDisplayModel) {\n  const { prefersOffset } = model\n  const { trackLabels } = getContainingView(model) as LinearGenomeViewModel\n  const track = getContainingTrack(model)\n  const trackName = getConf(track, 'name')\n  return trackLabels === 'overlapping' && !prefersOffset\n    ? measureText(trackName, trackLabelFontSize) + 100\n    : 10\n}\n","import React from 'react'\nimport { getContainingView } from '@jbrowse/core/util'\nimport { when } from 'mobx'\nimport {\n  ExportSvgDisplayOptions,\n  LinearGenomeViewModel,\n} from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport { WiggleDisplayModel } from './model'\nimport YScaleBars from '../components/YScaleBars'\n\nexport async function renderSvg(\n  self: WiggleDisplayModel,\n  opts: ExportSvgDisplayOptions,\n  superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>,\n) {\n  await when(() => !!self.stats && !!self.regionCannotBeRenderedText)\n  const { offsetPx } = getContainingView(self) as LinearGenomeViewModel\n  return (\n    <>\n      <g id=\"snpcov\">{await superRenderSvg(opts)}</g>\n      <g transform={`translate(${Math.max(-offsetPx, 0)})`}>\n        <YScaleBars model={self} orientation=\"left\" exportSVG />\n      </g>\n    </>\n  )\n}\n"],"names":["props","color","React","_extends","getFillProps","observer","model","rowHeight","labelWidth","exportSVG","needsCustomLegend","needsScalebar","needsFullHeightScalebar","rowHeightTooSmallForScalebar","renderColorBoxes","sources","svgFontSize","Math","min","canDisplayLabel","colorBoxWidth","legendWidth","extraOffset","RectBg","y","x","width","height","length","map","source","idx","boxHeight","key","name","fontSize","ticks","scaleType","getContainingView","legend","values","len","measureText","xpos","Wrapper","children","style","position","top","left","pointerEvents","orientation","stats","viewWidth","max","s","transform","getOffset","YScaleBar","ColorLegend","ScoreLegend","_source","JSON","stringify","moveUp","arr","sel","by","idxs","l","findIndex","v","sort","a","b","lastIdx","old","splice","moveDown","trackLabelFontSize","prefersOffset","trackLabels","track","getContainingTrack","trackName","getConf","async","renderSvg","self","opts","superRenderSvg","when","regionCannotBeRenderedText","offsetPx","id","YScaleBars"],"sourceRoot":""}
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