Mercurial > repos > fubar > jbrowse2
diff jbrowse2.py @ 6:79f7265f90bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 79e81bef99f582680d9aa4eec88980c675f3fae9-dirty
| author | fubar |
|---|---|
| date | Tue, 09 Jan 2024 06:55:34 +0000 |
| parents | efc64d8f4b72 |
| children | b04fd993b31e |
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--- a/jbrowse2.py Tue Jan 09 05:24:48 2024 +0000 +++ b/jbrowse2.py Tue Jan 09 06:55:34 2024 +0000 @@ -1163,7 +1163,7 @@ with open(self.config_json_file, "r") as config_file: config_json = json.load(config_file) - for track_conf in self.tracksToAdd: # config_json["tracks"]: + for track_conf in self.tracksToAdd: track_types[track_conf["trackId"]] = track_conf["type"] for on_track in data["visibility"]["default_on"]: @@ -1199,7 +1199,7 @@ elif self.genome_name is not None: refName = self.genome_name start = 0 - end = 1000 # Booh, hard coded! waiting for https://github.com/GMOD/jbrowse-components/issues/2708 + end = 100000 # Booh, hard coded! waiting for https://github.com/GMOD/jbrowse-components/issues/2708 if refName is not None: # TODO displayedRegions is not just zooming to the region, it hides the rest of the chromosome