Mercurial > repos > fubar > jbrowse2
diff macros.xml @ 98:b1260bca5fdc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 44d8fc559ecf5463a8f753561976fa26686c96f6
author | bgruening |
---|---|
date | Wed, 05 Jun 2024 10:00:07 +0000 |
parents | 74074746ccd8 |
children | 990291e918c7 |
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--- a/macros.xml Sat Jun 01 05:37:13 2024 +0000 +++ b/macros.xml Wed Jun 05 10:00:07 2024 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">2.11.0</token> + <token name="@TOOL_VERSION@">2.11.1</token> <xml name="edamInc"> <edam_topics> <edam_topic>topic_3307</edam_topic> @@ -13,7 +13,7 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">jbrowse2</requirement> - <requirement type="package" version="1.81">biopython</requirement> + <requirement type="package" version="1.82">biopython</requirement> <requirement type="package" version="0.7.1">bcbio-gff</requirement> <requirement type="package" version="1.19">samtools</requirement> <requirement type="package" version="6.0.1">pyyaml</requirement> @@ -25,24 +25,15 @@ </requirements> </xml> <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> - <token name="@WRAPPER_VERSION@">galaxy2</token> - <token name="@ATTRIBUTION@"><![CDATA[ -**Attribution** -This Galaxy tool relies on the JBrowse2, maintained by the GMOD Community. The Galaxy wrapper is -maintained by Ross Lazarus and Bjoern Gruening until the IUC complete their own. -]]> - </token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="creators"> <creator> - <person givenName="Helena" familyName="Rasche" url="https://github.com/hexylena" /> - <person givenName="Anthony" familyName="Bretaudeau" url="https://github.com/abretaud" /> - <person givenName="Ross" familyName="Lazarus" url="https://github.com/fubar2/" /> + <person givenName="Helena" familyName="Rasche" url="https://github.com/hexylena"/> + <person givenName="Anthony" familyName="Bretaudeau" url="https://github.com/abretaud"/> + <person givenName="Ross" familyName="Lazarus" url="https://github.com/fubar2/"/> </creator> </xml> - <xml name="genome_selector" - token_help="" - token_label="Fasta sequences" - token_optional="False" > + <xml name="genome_selector" token_help="" token_label="Fasta sequences" token_optional="False"> <conditional name="reference_genome"> <param name="genome_type_select" type="select" label="Reference genome to display" help="Built-in references"> <option selected="True" value="indexed">Use a built-in genome</option> @@ -112,12 +103,11 @@ <when value="collect"> <param name="autoCollection" type="data_collection" label="Collection of bed, bam and other track files"/> </when> - <when value="form"> - </when> + <when value="form"/> </conditional> - <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing " help="Default is to make an interactive browser appear when the 'eye' icon is activated"/> + <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/> <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/> - <param name="session_name" type="text" value="New JB2 session" label="Session name" help="Displayed at the top of the window"/> + <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/> <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/> <param name="primary_color" type="color" value="#0D233F" label="Primary color"> <sanitizer>