Mercurial > repos > fubar > jbrowse2
diff readme.rst @ 98:b1260bca5fdc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 44d8fc559ecf5463a8f753561976fa26686c96f6
| author | bgruening |
|---|---|
| date | Wed, 05 Jun 2024 10:00:07 +0000 |
| parents | 74074746ccd8 |
| children |
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--- a/readme.rst Sat Jun 01 05:37:13 2024 +0000 +++ b/readme.rst Wed Jun 05 10:00:07 2024 +0000 @@ -1,6 +1,8 @@ JBrowse2 in Galaxy ================== + JBrowse2 is a fast, embeddable genome browser built completely with + JavaScript and HTML5 Added April 2024: Multiple independent assembly/track sets in the same browser now working @@ -15,7 +17,6 @@ Testing history added with tests of the 8 simple formats hic and paf need small tests but work with big ones... - Added Mar 8: - URI as data source for tracks - Autogenerate from a collection now builtin to advanced options - ignores form @@ -40,7 +41,7 @@ .. image:: dm4_in_jb2.png -Other samples +Other tracks .. image:: jb2_samplerMay5.png @@ -80,17 +81,17 @@ - 2.10.0+galaxy2 -- UPDATED existing JBrowse1.16.11 code to JBrowse 2.10.0 -- was working well enough for VGP when previous PR discovered - - too late to backport all the fixes - - working default session and some other ideas copied instead. -- seems to work well with defaults. -- need to document and implement track settings by running the browser locally. -- works well enough to be useful in workflows such as TreeValGal. -- JB2 seems to set defaults wisely. -- not yet ideal for users who need fine grained track control. -- synteny (paf + reference) now working -- rehomed at https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 while IUC reviews are slowly sorted out. + - UPDATED existing JBrowse1.16.11 code to JBrowse 2.10.0 + - was working well enough for VGP when previous PR discovered + - too late to backport all the fixes + - working default session and some other ideas copied instead. + - seems to work well with defaults. + - need to document and implement track settings by running the browser locally. + - works well enough to be useful in workflows such as TreeValGal. + - JB2 seems to set defaults wisely. + - not yet ideal for users who need fine grained track control. + - synteny (paf + reference) now working + - rehomed at https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 while IUC reviews are slowly sorted out. Wrapper License (MIT/BSD Style)