diff jbrowse2.xml @ 116:b55199c56abd draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 7b9eed035bb929af8907bb9f810b0c201562cdf2
author bgruening
date Wed, 28 Aug 2024 07:34:43 +0000
parents 75f01bd05bd8
children c4b77883c0a7
line wrap: on
line diff
--- a/jbrowse2.xml	Tue Aug 20 09:10:27 2024 +0000
+++ b/jbrowse2.xml	Wed Aug 28 07:34:43 2024 +0000
@@ -105,7 +105,7 @@
                       </metadata>
                   </genome>
                 #else
-                  <genome path="$assembly.reference_genome.genome" label="${assembly.reference_genome.genome.name}" useuri="no">
+                  <genome path="$assembly.reference_genome.genome" label="${assembly.reference_genome.genome.element_identifier}" useuri="no">
                     <metadata>
 
                       <dataset id="${__app__.security.encode_id($assembly.reference_genome.genome.id)}"
@@ -171,7 +171,7 @@
                     <track cat="${tg.category}" format="${track.data_format.data_format_select}" visibility="${track.data_format.track_visibility}">
                     <files>
                         #for $dataset in $track.data_format.useuri.annotation:
-                              <trackFile path="${dataset}" ext="${dataset.ext}" label="${dataset.name}" useuri="no">
+                              <trackFile path="${dataset}" ext="${dataset.ext}" label="${dataset.element_identifier}" useuri="no">
                                 <metadata>
                                   <dataset id="${__app__.security.encode_id($dataset.id)}" hid="${dataset.hid}"
                                       size="${dataset.get_size(nice_size=True)}"