Mercurial > repos > fubar > jbrowse2

diff jbrowse2.xml @ 133:cec274db51c0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 7d28252954cae9f8db5f8a85d8f29cb2865b504b-dirty
author fubar
date Fri, 18 Oct 2024 11:57:55 +0000
parents 1efcc387bef4
children ed3a21033188
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line diff
--- a/jbrowse2.xml	Thu Oct 17 11:58:53 2024 +0000
+++ b/jbrowse2.xml	Fri Oct 18 11:57:55 2024 +0000
@@ -20,6 +20,7 @@
     </required_files>
     <version_command>python '${__tool_directory__}/jbrowse2.py' --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
+export SHELL="/bin/sh" &&
 mkdir -p '$output.files_path' &&
 cp '$trackxml' '$output.files_path/galaxy.xml' &&
 export JBROWSE2_PATH=\$(realpath \$(dirname \$(which jbrowse))/../opt/jbrowse2) &&