Mercurial > repos > fubar > jbrowse2
diff test-data/gff3/D.gff @ 0:d78175596286 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit cd77dffaad652cfb75b98bde5231beaa6d63cd5b-dirty
| author | fubar |
|---|---|
| date | Mon, 08 Jan 2024 09:20:33 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gff3/D.gff Mon Jan 08 09:20:33 2024 +0000 @@ -0,0 +1,46 @@ +##gff-version 3 +##sequence-region Merlin 1 172788 +Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1 +Merlin GeneMark.hmm CDS 14 20 1000 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA +Merlin GeneMark.hmm CDS 24 30 500 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA + +Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00 +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2 +Merlin GeneMark.hmm CDS 14 20 500 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff +Merlin GeneMark.hmm CDS 24 30 750 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00 + +Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff +Merlin GeneMark.hmm CDS 14 18 1000 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff +Merlin GeneMark.hmm CDS 20 30 800 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff +Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff +Merlin GeneMark.hmm CDS 14 22 400 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff +Merlin GeneMark.hmm CDS 24 30 1000 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff + + + +Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Gene with two splicing models;ID=1 +Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1; +Merlin exonerate UTR 1740 1799 . + . Parent=1A +Merlin exonerate CDS 1900 2080 . + 0 Parent=1A +Merlin exonerate CDS 2100 2120 . + 2 Parent=1A +Merlin exonerate UTR 2120 2300 . + . Parent=1A +Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1; +Merlin exonerate UTR 1740 1799 . + . Parent=1B +Merlin exonerate CDS 1800 1880 . + 0 Parent=1B +Merlin exonerate CDS 1900 1950 . + 1 Parent=1B +Merlin exonerate CDS 2100 2120 . + 2 Parent=1B +Merlin exonerate UTR 2120 2300 . + . Parent=1B + + + +# { +# "baseUrl": "http://localhost:8000/out/data/" +# "compress": 0, +# "label": "Transcript", +# "storeClass": "JBrowse/Store/SeqFeature/NCList", +# "trackType": "JBrowse/View/Track/CanvasFeatures", +# "type": "JBrowse/View/Track/CanvasFeatures", +# "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json", +# }