Mercurial > repos > fubar > jbrowse2
diff autogenJB2.py @ 71:e26a8a6d2d2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit cf208cecf0140ff43d145a44713ab7108057fb8b
| author | fubar |
|---|---|
| date | Sat, 30 Mar 2024 07:15:04 +0000 |
| parents | 7230a2422507 |
| children | 2bdb748df098 |
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--- a/autogenJB2.py Fri Mar 29 09:35:57 2024 +0000 +++ b/autogenJB2.py Sat Mar 30 07:15:04 2024 +0000 @@ -76,7 +76,7 @@ for i, x in enumerate(genome_paths) ], ) - logging.warn("#!!! paths=%s, genomes=%s" % (genome_paths, genomes)) + logging.debug("#!!! paths=%s, genomes=%s" % (genome_paths, genomes)) assref_name = jc.process_genomes(genomes[0]) default_session_data = { "visibility": { @@ -203,14 +203,14 @@ trackconf = jc.config_json.get("tracks", []) for gnome in jc.genome_names: trackconf += jc.tracksToAdd[gnome] - logging.warn( + logging.debug( "++++ adding trackconf=%s for gnome %s" % (trackconf, gnome) ) jc.config_json["tracks"] = trackconf assconf = jc.config_json.get("assemblies", []) assconf += jc.assemblies jc.config_json["assemblies"] = assconf - logging.warn("+++assemblies=%s, gnames=%s" % (assconf, jc.genome_names)) + logging.debug("+++assemblies=%s, gnames=%s" % (assconf, jc.genome_names)) jc.write_config() default_session_data.update({"session_name": sessName}) track_conf.update(default_session_data)