Mercurial > repos > fubar > jbrowse2
view repeathumfish.txt @ 55:469c0f6d87d7 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 0553bb75a96ae401623face516c1cf6e1cfe743f
| author | fubar |
|---|---|
| date | Sat, 16 Mar 2024 06:50:17 +0000 |
| parents | d6b0feb22584 |
| children |
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Calypte Anna ================================================== file name: rm_input.fasta sequences: 159 total length: 1059687259 bp (1043590636 bp excl N/X-runs) GC level: 41.49 % bases masked: 79638300 bp ( 7.63 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 32491 3044030 bp 0.29 % ALUs 0 0 bp 0.00 % MIRs 23309 1792450 bp 0.17 % LINEs: 168150 56100653 bp 5.38 % LINE1 446 51456 bp 0.00 % LINE2 3520 419909 bp 0.04 % L3/CR1 161974 55206716 bp 5.29 % LTR elements: 3415 1802798 bp 0.17 % ERVL 649 266145 bp 0.03 % ERVL-MaLRs 15 814 bp 0.00 % ERV_classI 1341 795364 bp 0.08 % ERV_classII 1159 705705 bp 0.07 % DNA elements: 12073 1651025 bp 0.16 % hAT-Charlie 338 55376 bp 0.01 % TcMar-Tigger 787 83392 bp 0.01 % Unclassified: 3325 445147 bp 0.04 % Total interspersed repeats: 63043653 bp 6.04 % Small RNA: 5543 745245 bp 0.07 % Satellites: 109 8273 bp 0.00 % Simple repeats: 284418 12956749 bp 1.24 % Low complexity: 61652 3494878 bp 0.33 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be homo sapiens RepeatMasker version 4.1.5 , default mode run with rmblastn version 2.13.0+ FamDB: CONS-Dfam_3.7 Amphioxus ================================================== file name: rm_input.fasta sequences: 96 total length: 458494623 bp (458485423 bp excl N/X-runs) GC level: 41.61 % bases masked: 9756877 bp ( 2.13 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 10212 946135 bp 0.21 % ALUs 0 0 bp 0.00 % MIRs 5121 527992 bp 0.12 % LINEs: 4019 622661 bp 0.14 % LINE1 179 11937 bp 0.00 % LINE2 662 63166 bp 0.01 % L3/CR1 2144 286741 bp 0.06 % LTR elements: 689 138371 bp 0.03 % ERVL 20 1005 bp 0.00 % ERVL-MaLRs 4 322 bp 0.00 % ERV_classI 584 118702 bp 0.03 % ERV_classII 28 1778 bp 0.00 % DNA elements: 850 57478 bp 0.01 % hAT-Charlie 46 2708 bp 0.00 % TcMar-Tigger 73 5236 bp 0.00 % Unclassified: 517 41430 bp 0.01 % Total interspersed repeats: 1806075 bp 0.39 % Small RNA: 5487 857233 bp 0.19 % Satellites: 629 50630 bp 0.01 % Simple repeats: 115914 6556304 bp 1.43 % Low complexity: 9124 485904 bp 0.11 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be homo sapiens RepeatMasker version 4.1.5 , default mode run with rmblastn version 2.13.0+ FamDB: CONS-Dfam_3.7