Mercurial > repos > fubar > jbrowse2
view x/static/js/1266.cd6d9354.chunk.js.map @ 125:49f3d3878413 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
| author | fubar |
|---|---|
| date | Sat, 05 Oct 2024 23:58:05 +0000 |
| parents | |
| children |
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React from 'react'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { getSnapshot } from 'mobx-state-tree'\nimport {\n getFillProps,\n getStrokeProps,\n getTickDisplayStr,\n} from '@jbrowse/core/util'\nimport { bpToPx } from '@jbrowse/core/util/Base1DUtils'\nimport { useTheme } from '@mui/material'\n\n// locals\nimport { getBlockLabelKeysToHide } from './util'\nimport { DotplotViewModel } from '../model'\n\nconst useStyles = makeStyles()(() => ({\n vtext: {\n gridColumn: '1/2',\n gridRow: '1/2',\n pointerEvents: 'none',\n userSelect: 'none',\n },\n htext: {\n gridColumn: '2/2',\n gridRow: '2/2',\n pointerEvents: 'none',\n userSelect: 'none',\n },\n}))\nexport const HorizontalAxis = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { viewWidth, borderY } = model\n const { classes } = useStyles()\n return (\n <svg width={viewWidth} height={borderY} className={classes.htext}>\n <HorizontalAxisRaw model={model} />\n </svg>\n )\n})\n\nexport const HorizontalAxisRaw = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { viewWidth, borderX, borderY, hview, htextRotation, hticks } = model\n const { offsetPx, width, dynamicBlocks, bpPerPx } = hview\n const dblocks = dynamicBlocks.contentBlocks\n const hide = getBlockLabelKeysToHide(dblocks, viewWidth, offsetPx)\n const theme = useTheme()\n const hviewSnap = {\n ...getSnapshot(hview),\n width,\n staticBlocks: hview.staticBlocks,\n }\n\n const ticks = hticks\n .map(\n tick =>\n [\n tick,\n bpToPx({\n refName: tick.refName,\n coord: tick.base,\n self: hviewSnap,\n })?.offsetPx,\n ] as const,\n )\n .filter(f => f[1] !== undefined)\n .map(f => [f[0], f[1]! - offsetPx] as const)\n\n return (\n <>\n {dblocks\n .filter(region => !hide.has(region.key))\n .map(region => {\n const x = region.offsetPx\n const y = 0\n const xoff = Math.floor(x - hview.offsetPx)\n\n return (\n <text\n transform={`rotate(${htextRotation},${xoff},${y})`}\n key={JSON.stringify(region)}\n x={xoff}\n y={y + 1}\n fontSize={11}\n dominantBaseline=\"hanging\"\n textAnchor=\"end\"\n {...getFillProps(theme.palette.text.primary)}\n >\n {region.refName}\n </text>\n )\n })}\n {ticks.map(([tick, x]) =>\n x > 0 && x < width ? (\n <line\n key={`line-${JSON.stringify(tick)}`}\n x1={x}\n x2={x}\n y1={0}\n y2={tick.type === 'major' ? 6 : 4}\n strokeWidth={1}\n {...getFillProps(theme.palette.text.primary)}\n />\n ) : null,\n )}\n {ticks\n .filter(t => t[0].type === 'major')\n .map(([tick, x]) =>\n x > 10 && x < width ? (\n <text\n x={x - 7}\n y={0}\n transform={`rotate(${htextRotation},${x},0)`}\n key={`text-${JSON.stringify(tick)}`}\n fontSize={11}\n dominantBaseline=\"middle\"\n textAnchor=\"end\"\n {...getFillProps(theme.palette.text.primary)}\n >\n {getTickDisplayStr(tick.base + 1, bpPerPx)}\n </text>\n ) : null,\n )}\n <text\n y={borderY - 12}\n x={(viewWidth - borderX) / 2}\n textAnchor=\"middle\"\n fontSize={11}\n dominantBaseline=\"hanging\"\n {...getFillProps(theme.palette.text.primary)}\n >\n {hview.assemblyNames.join(',')}\n </text>\n </>\n )\n})\nexport const VerticalAxis = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { borderX, viewHeight } = model\n const { classes } = useStyles()\n return (\n <svg className={classes.vtext} width={borderX} height={viewHeight}>\n <VerticalAxisRaw model={model} />\n </svg>\n )\n})\n\nexport const VerticalAxisRaw = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { viewHeight, borderX, borderY, vview, vtextRotation, vticks } = model\n const { offsetPx, width, dynamicBlocks, bpPerPx } = vview\n const dblocks = dynamicBlocks.contentBlocks\n const hide = getBlockLabelKeysToHide(dblocks, viewHeight, offsetPx)\n const theme = useTheme()\n const vviewSnap = {\n ...getSnapshot(vview),\n width,\n staticBlocks: vview.staticBlocks,\n }\n const ticks = vticks\n .map(\n tick =>\n [\n tick,\n bpToPx({\n refName: tick.refName,\n coord: tick.base,\n self: vviewSnap,\n })?.offsetPx,\n ] as const,\n )\n .filter(f => f[1] !== undefined)\n .map(f => [f[0], f[1]! - offsetPx] as const)\n\n return (\n <>\n {dblocks\n .filter(region => !hide.has(region.key))\n .map(region => {\n const y = region.offsetPx\n const x = borderX\n const yoff = Math.floor(viewHeight - y + offsetPx)\n\n return (\n <text\n transform={`rotate(${vtextRotation},${x},${y})`}\n key={JSON.stringify(region)}\n x={x}\n y={yoff}\n fontSize={11}\n textAnchor=\"end\"\n {...getFillProps(theme.palette.text.primary)}\n >\n {region.refName}\n </text>\n )\n })}\n {ticks.map(([tick, y]) =>\n y > 0 ? (\n <line\n key={`line-${JSON.stringify(tick)}`}\n y1={viewHeight - y}\n y2={viewHeight - y}\n x1={borderX}\n x2={borderX - (tick.type === 'major' ? 6 : 4)}\n strokeWidth={1}\n {...getStrokeProps(theme.palette.grey[400])}\n />\n ) : null,\n )}\n {ticks\n .filter(t => t[0].type === 'major')\n .map(([tick, y]) =>\n y > 10 && y < viewHeight ? (\n <text\n y={viewHeight - y - 3}\n x={borderX - 7}\n key={`text-${JSON.stringify(tick)}`}\n textAnchor=\"end\"\n dominantBaseline=\"hanging\"\n fontSize={11}\n {...getFillProps(theme.palette.text.primary)}\n >\n {getTickDisplayStr(tick.base + 1, bpPerPx)}\n </text>\n ) : null,\n )}\n <text\n y={(viewHeight - borderY) / 2}\n x={12}\n transform={`rotate(-90,12,${(viewHeight - borderY) / 2})`}\n textAnchor=\"middle\"\n fontSize={11}\n {...getFillProps(theme.palette.text.primary)}\n >\n {vview.assemblyNames.join(',')}\n </text>\n </>\n )\n})\n","import React from 'react'\nimport { observer } from 'mobx-react'\nimport { useTheme } from '@mui/material'\n\n// locals\nimport { DotplotViewModel } from '../model'\nimport { getFillProps, getStrokeProps } from '@jbrowse/core/util'\n\nexport const GridRaw = observer(function ({\n model,\n children,\n}: {\n model: DotplotViewModel\n children?: React.ReactNode\n}) {\n const { viewWidth, viewHeight, hview, vview } = model\n const hblocks = hview.dynamicBlocks.contentBlocks\n const vblocks = vview.dynamicBlocks.contentBlocks\n if (!hblocks.length || !vblocks.length) {\n return null\n }\n const htop = hview.displayedRegionsTotalPx - hview.offsetPx\n const vtop = vview.displayedRegionsTotalPx - vview.offsetPx\n const hbottom = hblocks[0]!.offsetPx - hview.offsetPx\n const vbottom = vblocks[0]!.offsetPx - vview.offsetPx\n const theme = useTheme()\n const stroke = theme.palette.divider\n\n // Uses math.max/min avoid making very large SVG rect offscreen element,\n // which can sometimes fail to draw\n const rx = Math.max(hbottom, 0)\n const ry = Math.max(viewHeight - vtop, 0)\n const w = Math.min(htop - hbottom, viewWidth)\n const h = Math.min(viewHeight - vbottom - ry, viewHeight)\n\n let lastx = Number.POSITIVE_INFINITY\n let lasty = Number.POSITIVE_INFINITY\n return (\n <>\n <rect\n x={rx}\n y={ry}\n width={w}\n height={h}\n {...getFillProps(theme.palette.background.default)}\n />\n <g>\n {hblocks.map(region => {\n const x = region.offsetPx - hview.offsetPx\n const render = Math.floor(x) !== Math.floor(lastx)\n if (render) {\n lastx = x\n }\n return render ? (\n <line\n key={JSON.stringify(region)}\n x1={x}\n y1={0}\n x2={x}\n y2={viewHeight}\n {...getStrokeProps(stroke)}\n />\n ) : null\n })}\n {vblocks.map(region => {\n const y = viewHeight - (region.offsetPx - vview.offsetPx)\n const render = Math.floor(y) !== Math.floor(lasty)\n if (render) {\n lasty = y\n }\n return render ? (\n <line\n key={JSON.stringify(region)}\n x1={0}\n y1={y}\n x2={viewWidth}\n y2={y}\n {...getStrokeProps(stroke)}\n />\n ) : null\n })}\n <line\n x1={htop}\n y1={0}\n x2={htop}\n y2={viewHeight}\n {...getStrokeProps(stroke)}\n />\n <line\n x1={0}\n y1={viewHeight - vtop}\n x2={viewWidth}\n y2={viewHeight - vtop}\n {...getStrokeProps(stroke)}\n />\n </g>\n {children}\n </>\n )\n})\n\nexport default function Grid({\n model,\n children,\n}: {\n model: DotplotViewModel\n children?: React.ReactNode\n}) {\n const { viewWidth, viewHeight } = model\n return (\n <svg\n width={viewWidth}\n height={viewHeight}\n style={{ background: 'rgba(0,0,0,0.12)' }}\n >\n <GridRaw model={model}>{children}</GridRaw>\n </svg>\n )\n}\n","import React from 'react'\nimport { useTheme } from '@mui/material'\nimport { stripAlpha } from '@jbrowse/core/util'\n\nexport default function SVGBackground({\n width,\n height,\n}: {\n width: number\n height: number\n}) {\n const theme = useTheme()\n return (\n <rect\n x={0}\n y={0}\n width={width}\n height={height}\n fill={stripAlpha(theme.palette.background.default)}\n />\n )\n}\n","import React from 'react'\nimport { when } from 'mobx'\nimport { getSession, renderToStaticMarkup } from '@jbrowse/core/util'\nimport { ThemeProvider } from '@mui/material'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport { getRoot } from 'mobx-state-tree'\n\n// locals\nimport { DotplotViewModel, ExportSvgOptions } from '../model'\nimport { GridRaw } from '../components/Grid'\nimport { HorizontalAxisRaw, VerticalAxisRaw } from '../components/Axes'\nimport SVGBackground from './SVGBackground'\n\n// render LGV to SVG\nexport async function renderToSvg(\n model: DotplotViewModel,\n opts: ExportSvgOptions,\n) {\n await when(() => model.initialized)\n const { themeName = 'default', Wrapper = ({ children }) => children } = opts\n\n const { createRootFn } = getRoot<any>(model)\n const session = getSession(model)\n const theme = session.allThemes?.()[themeName]\n const { width, borderX, viewWidth, viewHeight, tracks, height } = model\n const shift = 50\n const displayResults = await Promise.all(\n tracks.map(async track => {\n const display = track.displays[0]\n await when(() => (display.ready !== undefined ? display.ready : true))\n return { track, result: await display.renderSvg({ ...opts, theme }) }\n }),\n )\n const w = width + shift * 2\n\n // the xlink namespace is used for rendering <image> tag\n return renderToStaticMarkup(\n <ThemeProvider theme={createJBrowseTheme(theme)}>\n <Wrapper>\n <svg\n width={width}\n height={height}\n xmlns=\"http://www.w3.org/2000/svg\"\n xmlnsXlink=\"http://www.w3.org/1999/xlink\"\n viewBox={[0, 0, w, height].toString()}\n >\n <SVGBackground width={w} height={height} />\n <VerticalAxisRaw model={model} />\n <g transform={`translate(${borderX} 0)`}>\n <GridRaw model={model} />\n <defs>\n <clipPath id=\"clip-ruler\">\n <rect x={0} y={0} width={viewWidth} height={viewHeight} />\n </clipPath>\n </defs>\n <g clipPath=\"url(#clip-ruler)\">\n {displayResults.map(({ result }, i) => (\n /* biome-ignore lint/suspicious/noArrayIndexKey: */\n <g key={i}>{result}</g>\n ))}\n </g>\n </g>\n <g transform={`translate(${borderX} ${viewHeight})`}>\n <HorizontalAxisRaw model={model} />\n </g>\n </svg>\n </Wrapper>\n </ThemeProvider>,\n createRootFn,\n )\n}\n"],"names":["useStyles","makeStyles","vtext","gridColumn","gridRow","pointerEvents","userSelect","htext","HorizontalAxis","observer","model","viewWidth","borderY","classes","React","width","height","className","HorizontalAxisRaw","borderX","hview","htextRotation","hticks","offsetPx","dynamicBlocks","bpPerPx","dblocks","contentBlocks","hide","getBlockLabelKeysToHide","theme","useTheme","hviewSnap","getSnapshot","staticBlocks","ticks","map","tick","bpToPx","refName","coord","base","self","filter","f","undefined","region","has","key","x","xoff","Math","floor","_extends","transform","JSON","stringify","y","fontSize","dominantBaseline","textAnchor","getFillProps","palette","text","primary","x1","x2","y1","y2","type","strokeWidth","t","getTickDisplayStr","assemblyNames","join","VerticalAxis","viewHeight","VerticalAxisRaw","vview","vtextRotation","vticks","vviewSnap","yoff","getStrokeProps","grey","GridRaw","children","hblocks","vblocks","length","htop","displayedRegionsTotalPx","vtop","hbottom","vbottom","stroke","divider","rx","max","ry","w","min","h","lastx","Number","POSITIVE_INFINITY","lasty","background","default","render","Grid","style","SVGBackground","fill","stripAlpha","async","renderToSvg","opts","when","initialized","themeName","Wrapper","createRootFn","getRoot","session","getSession","allThemes","tracks","displayResults","Promise","all","display","track","displays","ready","result","renderSvg","shift","renderToStaticMarkup","ThemeProvider","createJBrowseTheme","xmlns","xmlnsXlink","viewBox","toString","id","clipPath","i"],"sourceRoot":""}