Mercurial > repos > fubar > jbrowse2
view x/static/js/8856.4593419f.chunk.js.map @ 125:49f3d3878413 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
author | fubar |
---|---|
date | Sat, 05 Oct 2024 23:58:05 +0000 |
parents | |
children |
line wrap: on
line source
{"version":3,"file":"static/js/8856.4593419f.chunk.js","mappings":"4NA2BO,SAASA,EAAcC,IAC5BC,EAAAA,EAAAA,aACED,GACAE,EAAAA,EAAAA,UAAQ,KACN,MAAMC,GAAOC,EAAAA,EAAAA,mBAAkBJ,GAC/B,IAAKG,EAAKE,YACR,OAEF,MAAMC,EAAON,EAAKO,YAAYC,WAAW,MACnCC,EAAOT,EAAKU,qBAAqBF,WAAW,MAClD,IAAKF,IAASG,EACZ,OAGF,MAAME,EAASR,EAAKS,wBACdC,EAAQV,EAAKU,MACnBP,EAAKQ,UAAU,EAAG,EAAGD,EAAOF,GAC5BF,EAAKK,UAAU,EAAG,EAAGD,EAAOF,IAC5BI,EAAAA,EAAAA,IAAQf,EAAMM,EAAMG,EAAK,MAI7BR,EAAAA,EAAAA,aACED,GACAE,EAAAA,EAAAA,UAAQ,MACOE,EAAAA,EAAAA,mBAAkBJ,GACrBK,cAGVW,EAAAA,EAAAA,IAAqBhB,EAAK,MAS9BC,EAAAA,EAAAA,aACED,GACAiB,EAAAA,EAAAA,WACE,KACE,MAAMd,GAAOC,EAAAA,EAAAA,mBAAkBJ,GAC/B,MAAO,CACLkB,QAASf,EAAKgB,MAAMC,KAAIC,GAAKA,EAAEH,UAI/BI,iBAAkBC,KAAKC,UACrBrB,EAAKgB,MAAMC,KAAIC,GAAKA,EAAEC,oBAExBG,SAAUzB,EAAKyB,SACfpB,YAAaF,EAAKE,YACnB,IAEH,EAAGA,kBACD,IAAKA,EACH,OAEF,MAAM,gBAAEqB,IAAoBC,EAAAA,EAAAA,YAAW3B,GAEjC4B,GADOxB,EAAAA,EAAAA,mBAAkBJ,GACRmB,MAAMC,KAAIjB,IAAQ,KACpC0B,EAAAA,EAAAA,aAAY1B,GACfU,MAAOV,EAAKU,MACZiB,aAAc3B,EAAK2B,aACnBC,wBAAyB5B,EAAK4B,wBAC9BC,kBAAmB7B,EAAK6B,sBAGpBZ,EAAM,GACNa,EAAQjC,EAAKyB,UAAY,GAE/B,IAAK,MAAMS,KAAKD,EAAO,CACrB,MAAME,EAAOD,EAAEE,IAAI,QACnB,IAAIC,EAAMH,EAAEE,IAAI,SACZE,EAAMJ,EAAEE,IAAI,OAChB,MAAMG,EAAMJ,EAAKK,MACXC,EAAMN,EAAKO,KAEQ,IAArBR,EAAEE,IAAI,aACNE,EAAKD,GAAO,CAACA,EAAKC,IAEtB,MAAMK,EAAKjB,EAAgBU,IAAIF,EAAEE,IAAI,iBAC/BQ,EAAKlB,EAAgBU,IAAID,EAAKU,cAC9BC,EAAKZ,EAAEE,IAAI,WACXW,EAAKZ,EAAKa,QACVC,EAAON,GAAIO,oBAAoBJ,IAAOA,EACtCK,EAAOP,GAAIM,oBAAoBH,IAAOA,EACtCK,EAAKxB,EAAU,GACfyB,EAAKzB,EAAU,GACf0B,GAAMC,EAAAA,EAAAA,IAAO,CAAEvD,KAAMoD,EAAIJ,QAASC,EAAMO,MAAOnB,IAC/CoB,GAAMF,EAAAA,EAAAA,IAAO,CAAEvD,KAAMoD,EAAIJ,QAASC,EAAMO,MAAOlB,IAC/CoB,GAAMH,EAAAA,EAAAA,IAAO,CAAEvD,KAAMqD,EAAIL,QAASG,EAAMK,MAAOjB,IAC/CoB,GAAMJ,EAAAA,EAAAA,IAAO,CAAEvD,KAAMqD,EAAIL,QAASG,EAAMK,MAAOf,IAErD,QACUmB,IAARN,QACQM,IAARH,QACQG,IAARF,QACQE,IAARD,EAEA,SAGF,MAAME,EAAQ3B,EAAEE,IAAI,SACpBhB,EAAI0C,KAAK,CACPR,MACAG,MACAC,MACAC,MACAzB,IACA2B,MAAOE,EAAAA,GAAAA,WAA0BF,IAErC,CAEA7D,EAAKgE,iBAAiB5C,EAAI,GAE5B,CAAE6C,iBAAiB,IAGzB,C,kGCjHO,SAASC,GAAgB,QAC9BC,EAAO,IACPC,EAAG,QACHC,EAAO,GACPC,EAAE,OACF3D,EAAM,WACN4D,EAAU,SACVC,EAAQ,UACRC,EAAS,SACTC,IAYA,MAAM,IAAEpB,EAAG,IAAEG,EAAG,IAAEC,EAAG,IAAEC,GAAQQ,EAEzBQ,EAAMrB,EAAIsB,SAAWP,EAAQ,GAC7BQ,EAAMpB,EAAImB,SAAWP,EAAQ,GAC7BS,EAAMpB,EAAIkB,SAAWP,EAAQ,GAC7BU,EAAMpB,EAAIiB,SAAWP,EAAQ,GAE7BW,EAAKC,KAAKC,IAAIL,EAAMF,GACpBQ,EAAKF,KAAKC,IAAIH,EAAMD,GAEpBM,EAAKzE,EACL0E,GAAOD,EAFF,GAEa,EAClBE,EAAOL,KAAKM,IAAIT,EAAKC,GACrBS,EAAOP,KAAKQ,IAAIX,EAAKC,IAEtBW,EAAAA,EAAAA,gBAAeJ,EAAME,GAAOhB,EAAUC,EAAYD,KAMnDQ,GAAM,GAAKG,GAAM,EAGdT,IACHN,EAAIuB,YACJvB,EAAIwB,OAAOjB,EAjBJ,GAkBHJ,EACFH,EAAIyB,cAAclB,EAAKU,EAAKP,EAAKO,EAAKP,EAAKM,GAE3ChB,EAAI0B,OAAOhB,EAAKM,GAElBhB,EAAI2B,WAGNC,EAAK5B,EAAKO,EAAKE,EA1BN,EA0BeE,EAAKD,EAAKM,EAAIC,EAAKd,GAC3CD,EAAGF,IAEP,CAEO,SAAS4B,EACd5B,EACA6B,EACAC,EACAC,EACAC,EACAC,EACAjB,EACAC,EACAd,GAEIA,EAyBC,SACLH,EACA6B,EACAC,EACAC,EACAC,EACAC,EACAjB,EACAC,GAEA,MAAMiB,EAAOrB,KAAKC,IAAIe,EAAKC,GACrBK,EAAOtB,KAAKC,IAAIe,EAAKC,GAK3B,GAAII,EAAO,GAAKC,EAAO,GAAKL,EAAKD,GAAMhB,KAAKC,IAAIe,EAAKG,GAAM,IAAK,CAC9D,MAAMI,EAAMP,EACZA,EAAKC,EACLA,EAAKM,CACP,CACApC,EAAIuB,YACJvB,EAAIwB,OAAOK,EAAIE,GACf/B,EAAI0B,OAAOI,EAAIC,GACf/B,EAAIyB,cAAcK,EAAIb,EAAKe,EAAIf,EAAKe,EAAIhB,GACxChB,EAAI0B,OAAOO,EAAIjB,GACfhB,EAAIyB,cAAcQ,EAAIhB,EAAKY,EAAIZ,EAAKY,EAAIE,GACxC/B,EAAIqC,YACJrC,EAAIsC,MACN,CArDIC,CAAcvC,EAAK6B,EAAIC,EAAIC,EAAIC,EAAIC,EAAIjB,EAAIC,GAMxC,SACLjB,EACA6B,EACAC,EACAC,EACAC,EACAC,EACAjB,GAEAhB,EAAIuB,YACJvB,EAAIwB,OAAOK,EAAIE,GACf/B,EAAI0B,OAAOI,EAAIC,GACf/B,EAAI0B,OAAOM,EAAIhB,GACfhB,EAAI0B,OAAOO,EAAIjB,GACfhB,EAAIqC,YACJrC,EAAIsC,MACN,CApBIE,CAAQxC,EAAK6B,EAAIC,EAAIC,EAAIC,EAAIC,EAAIjB,EAErC,CAmDO,SAASyB,EACdC,EACAC,GAEA,MAAM5G,GAAOC,EAAAA,EAAAA,mBAAkB2G,GACzBC,GAAQC,EAAAA,EAAAA,oBAAmBF,GAC3B9D,EAAO8D,EAAMG,eACb/D,EAAO4D,EAAMrG,oBACnB,IAAKuC,IAASE,EACZ,OAEF,MAAMgE,EAAOlE,EAAKmE,wBACZ9G,EAAO2C,EAAKzC,WAAW,MACvB6G,EAAOlE,EAAK3C,WAAW,MAC7B,IAAKF,IAAS+G,EACZ,OAEF,MAAMC,EAAIR,EAAMS,QAAUJ,EAAKK,KACzBC,EAAIX,EAAMY,QAAUP,EAAKQ,KACxB7E,EAAI8E,EAAIC,GAAMvH,EAAKwH,aAAaR,EAAGG,EAAG,EAAG,GAAGM,KAC7CC,EAAiB/C,KAAKgD,MAAMC,EAAAA,GAAkBnB,EAAMoB,UACpDC,GAAKC,EAAAA,EAAAA,IAAMvF,EAAK8E,EAAKC,EAAKG,GAC1BM,EAAOvB,EAAMwB,cAAcH,GACjC,GAAIE,EAAM,CACR,MAAM,EAAEpG,GAAMoG,EACdvB,EAAMyB,WAAWtG,EAAEkG,MACnB,MAAMK,GAAU9G,EAAAA,EAAAA,YAAWoF,IACvB2B,EAAAA,EAAAA,2BAA0BD,IAC5BA,EAAQE,WACNF,EAAQG,UAAU,oBAAqB,cAAe,CACpDzI,OACA6G,QACA6B,YAAa3G,EAAE4G,WAIvB,CACA,OAAOR,CACT,CAEO,SAASS,EACdjC,EACAC,EACAiC,GAEAlC,EAAMmC,iBACN,MAAMhG,EAAO8D,EAAMG,eACb/D,EAAO4D,EAAMrG,oBACnB,IAAKuC,IAASE,EACZ,OAEF,MAAMgE,EAAOlE,EAAKmE,wBACZ9G,EAAO2C,EAAKzC,WAAW,MACvB6G,EAAOlE,EAAK3C,WAAW,MAC7B,IAAKF,IAAS+G,EACZ,OAEF,MAAM,QAAEE,EAAO,QAAEG,GAAYZ,EACvBQ,EAAIC,EAAUJ,EAAKK,KACnBC,EAAIC,EAAUP,EAAKQ,KAClB7E,EAAI8E,EAAIC,GAAMvH,EAAKwH,aAAaR,EAAGG,EAAG,EAAG,GAAGM,KAC7CC,EAAiB/C,KAAKgD,MAAMC,EAAAA,GAAkBnB,EAAMoB,UACpDC,GAAKC,EAAAA,EAAAA,IAAMvF,EAAK8E,EAAKC,EAAKG,GAC1B9F,EAAI6E,EAAMwB,cAAcH,GAC1BlG,IACF6E,EAAMyB,WAAWtG,EAAEA,EAAEkG,MACrBY,EAAY,CAAEzB,UAASG,UAASvD,QAASjC,IAE7C,CAEO,SAASgH,EAAWhH,EAAYiH,EAAkBC,GAEvD,MAAMC,EAAKnH,EAAE4G,SAePQ,EAAKD,EAAGlH,KACR6C,EAAKqE,EAAG3G,IAAM2G,EAAG7G,MACjB2C,EAAKmE,EAAG5G,IAAM4G,EAAG9G,MACjB+G,EAAWF,EAAGE,SACdC,EAAKH,EAAGI,KACRC,EAAKJ,EAAGG,KACd,MAAO,CACL,UAASE,EAAAA,EAAAA,mBAAkBN,KAC3B,UAASM,EAAAA,EAAAA,mBAAkBL,KAC3B,cAA4B,IAAfD,EAAGO,SAChB,cAAc5E,EAAG6E,eAAe,WAChC,eAAe1E,EAAG0E,eAAe,WACjCN,EAAW,aAAaA,EAASO,YAAY,KAAO,GACpDX,EAAU,mBAAmBA,IAAUC,IAAe,GACtDI,EAAK,WAAWA,IAAO,GACvBE,EAAK,WAAWA,IAAO,IAEtBK,QAAO7H,KAAOA,IACd8H,KAAK,QACV,C,yFCtQO,MAAM9B,EAAkB,SAE/B,SAAS+B,EAAUC,GAIjB,MAAO,OAHGjF,KAAKgD,MAAMiC,EAAM,OAAe,OAChCjF,KAAKgD,MAAMiC,EAAM,KAAO,OACxBA,EAAM,MAElB,CAEA,MAAMC,EAAW,CACfC,EAAG,QACHC,EAAG,QACHC,EAAG,QACHC,EAAG,QACHC,EAAG,QACH,IAAK,SAGDC,EAAY,EAEZjG,EAAW,KAEV,SAAS6D,EAAMqC,EAAWC,EAAWC,EAAW5C,GACrD,OAAO/C,KAAKgD,OAAW,IAAJyC,EAAU,IAAU,IAAJC,EAAUC,EAAI,GAAK5C,EACxD,CAEO,SAASjH,EACdgG,EACAzG,EACAG,GAEA,MAAMN,GAAOC,EAAAA,EAAAA,mBAAkB2G,GACzBxC,EAAapE,EAAKoE,WAClBsG,EAAY1K,EAAK0K,UACjBlK,EAASR,EAAKS,wBACdC,EAAQV,EAAKU,MACbiK,EAAW3K,EAAKgB,MAAMC,KAAIC,GAAKA,EAAEH,UAEnCT,IACFA,EAAKsK,uBAAwB,GAG/BzK,EAAKqF,YACL,MAAMqF,EAAUjE,EAAMwB,cAChBlE,EAAUlE,EAAKgB,MAAMC,KAAIC,GAAKA,EAAEuD,WAEhCoD,EAAiB/C,KAAKgD,MAAMC,EAAkB8C,EAAQC,QAI5D3K,EAAK4K,UAAYf,EAASK,EAC1BlK,EAAK6K,YAAchB,EAASK,EAC5B,IAAK,MAAM,IAAElH,EAAG,IAAEG,EAAG,IAAEC,EAAG,IAAEC,KAASqH,EAAS,CAC5C,MAAMrG,EAAMrB,EAAIsB,SAAWP,EAAQ,GAC7BQ,EAAMpB,EAAImB,SAAWP,EAAQ,GAC7BS,EAAMpB,EAAIkB,SAAWP,EAAQ,GAC7BU,EAAMpB,EAAIiB,SAAWP,EAAQ,GAC7BW,EAAKC,KAAKC,IAAIL,EAAMF,GACpBQ,EAAKF,KAAKC,IAAIH,EAAMD,GACpBqB,EAAK,EACLf,EAAKzE,EACL0E,GAAOD,EAAKe,GAAM,EAKtBnB,GAAMyF,GACNtF,GAAMsF,GACN3F,EAAMjE,EAAQ2D,GACdM,GAAON,IAEPlE,EAAKsF,OAAOjB,EAAKwB,GACb5B,EACFjE,EAAKuF,cAAclB,EAAKU,EAAKP,EAAKO,EAAKP,EAAKM,GAE5C9E,EAAKwF,OAAOhB,EAAKM,GAGvB,CACA9E,EAAKyF,SAILzF,EAAK4K,UAAYf,EAASK,EAC1BlK,EAAK6K,YAAchB,EAASK,EAC5B,IAAK,MAAM,IAAElH,EAAG,IAAEG,EAAG,IAAEC,EAAG,IAAEC,EAAG,EAAEzB,EAAC,MAAE2B,KAAWmH,EAAS,CACtD,MAAMrG,EAAMrB,EAAIsB,SAAWP,EAAQ,GAC7BQ,EAAMpB,EAAImB,SAAWP,EAAQ,GAC7BS,EAAMpB,EAAIkB,SAAWP,EAAQ,GAC7BU,EAAMpB,EAAIiB,SAAWP,EAAQ,GAC7BW,EAAKC,KAAKC,IAAIL,EAAMF,GACpBQ,EAAKF,KAAKC,IAAIH,EAAMD,GACpBQ,EAAOL,KAAKM,IAAIT,EAAKC,GACrBS,EAAOP,KAAKQ,IAAIX,EAAKC,GACrBoB,EAAK,EACLf,EAAKzE,EACL0E,GAAOD,EAAKe,GAAM,EAExB,KACInB,GAAMyF,GAAatF,GAAMsF,KAC3B/E,EAAAA,EAAAA,gBAAeJ,EAAME,GAAOhB,EAAUrE,EAAKU,MAAQ2D,GACnD,CACA,MAAM4G,EAAKlJ,EAAEE,IAAI,UACXiJ,GAAa,IAARD,EAAYvG,EAAMF,EAKvB2G,EAAOD,IAJM,IAARD,EAAYzG,EAAME,GAIN,GAAK,EACtB0G,GAAQzG,EAAMC,EAAM,GAAK,GAAKqG,EAGpC,IAAII,EAAMH,EACNI,GAAc,IAARL,EAAYrG,EAAMD,EAC5B,GAAIjB,EAAMoH,QAAUJ,EAAW,CAE7B,IAAIa,GAAiB,EAGjBC,EAAM,EACNC,EAAM,EACV,MAAMC,EAAkB5G,KAAKgD,MAAMC,EAAkBrE,EAAMoH,QAC3D,IAAK,IAAIa,EAAI,EAAGA,EAAIjI,EAAMoH,OAAQa,GAAK,EAAG,CACxC,MAAM5B,EAAM4B,EAAID,EAAkB,EAE5BE,GAAOlI,EAAMiI,GACbE,EAAKnI,EAAMiI,EAAI,GAEhBJ,IACHC,EAAMH,EACNI,EAAMH,GAGR,MAAMQ,EAAKF,EAAMjB,EAAS,GACpBoB,EAAKH,EAAMjB,EAAS,GAe1B,GAbW,MAAPkB,GAAqB,MAAPA,GAAqB,MAAPA,GAC9BR,GAAOS,EAAKX,EACZG,GAAOS,EAAKX,GACI,MAAPS,GAAqB,MAAPA,EACvBR,GAAOS,EAAKX,EAGE,MAAPU,IACPP,GAAOS,EAAKX,KAOVtG,KAAKQ,IAAIkG,EAAKC,EAAKJ,EAAKC,GAAO,GAC/BxG,KAAKM,IAAIoG,EAAKC,EAAKJ,EAAKC,GAAO5K,GAEjC,CAIA,MAAMsL,EAAYL,EAAIjI,EAAMoH,OAAS,EAEnChG,KAAKC,IAAIsG,EAAMG,IAAQ,GACvB1G,KAAKC,IAAIuG,EAAMG,IAAQ,GACvBO,EAEAT,GAAiB,GAKjBpL,EAAK4K,UACHf,EAAUuB,GAAkBO,EAAK,GAAMC,EAAK,EAAIF,EAAK,KACvDN,GAAiB,GAEjB1F,EAAAA,EAAAA,IAAK1F,EAAMqL,EAAKH,EAAKrF,EAAIsF,EAAKG,EAAKxG,EAAIC,EAAKd,GACxC9D,IACFA,EAAKyK,UAAYjB,EAAUC,IAC3BlE,EAAAA,EAAAA,IAAKvF,EAAMkL,EAAKH,EAAKrF,EAAIsF,EAAKG,EAAKxG,EAAIC,EAAKd,IAGlD,CACF,CACF,MACEyB,EAAAA,EAAAA,IAAK1F,EAAMqE,EAAKE,EAAKsB,EAAIpB,EAAKD,EAAKM,EAAIC,EAAKd,EAEhD,CACF,CAGA,MAAM8C,EAAON,EAAMG,gBAAgB1G,WAAW,MAC9C,GAAK6G,EAAL,CAGAA,EAAK0D,uBAAwB,EAC7B1D,EAAKvG,UAAU,EAAG,EAAGD,EAAOF,GAC5B,IAAK,IAAIyL,EAAI,EAAGA,EAAIpB,EAAQC,OAAQmB,IAAK,CACvC,MAAMjI,EAAU6G,EAAQoB,GAClBlC,EAAMkC,EAAIpE,EAAiB,EACjCX,EAAK6D,UAAYjB,EAAUC,IAG3BhG,EAAAA,EAAAA,IAAgB,CACdI,GAAIF,IACFA,EAAIsC,MAAM,EAEZvC,UACAC,IAAKiD,EACL9C,aACAF,UACAG,WACAC,UAAWtE,EAAKU,MAChB6D,UAAU,EACV/D,UAEJ,CAtBA,CAwBF,CAEO,SAASK,EAAqB+F,GACnC,MAAM,QAAEsF,EAAO,YAAEC,GAAgBvF,EAE3B5G,GAAOC,EAAAA,EAAAA,mBAAkB2G,GACzBxC,EAAapE,EAAKoE,WAClB5D,EAASR,EAAKS,wBACdC,EAAQV,EAAKU,MACbuD,EAAM2C,EAAMwF,iBAAiB/L,WAAW,MACxC6D,EAAUlE,EAAKgB,MAAMC,KAAIC,GAAKA,EAAEuD,WAEtC,IAAKR,EACH,OAEFA,EAAIoI,iBACJpI,EAAIqI,MAZ0B,KAa9BrI,EAAItD,UAAU,EAAG,EAAGD,EAAOF,GAC3B,MAAM+L,EAAW3F,EAAM4F,QAAQL,GAAe,IAC1CI,IACFtI,EAAI8G,UAAY,kBAChBhH,EAAAA,EAAAA,IAAgB,CACdI,GAAIF,IACFA,EAAIsC,MAAM,EAEZvC,QAASuI,EACTtI,MACAI,WACAC,UAAWtE,EAAKU,MAChB0D,aACAF,UACA1D,YAGJ,MAAMiM,EAAW7F,EAAM4F,QAAQN,GAAW,IACtCO,IACFxI,EAAI+G,YAAc,qBAElBjH,EAAAA,EAAAA,IAAgB,CACdI,GAAIF,IACFA,EAAI2B,QAAQ,EAEd5B,QAASyI,EACTxI,MACAI,WACAC,UAAWtE,EAAKU,MAChB0D,aACAF,UACA1D,WAGN,C","sources":["../../../plugins/linear-comparative-view/src/LinearSyntenyDisplay/afterAttach.ts","../../../plugins/linear-comparative-view/src/LinearSyntenyDisplay/components/util.ts","../../../plugins/linear-comparative-view/src/LinearSyntenyDisplay/drawSynteny.ts"],"sourcesContent":["import { addDisposer, getSnapshot } from 'mobx-state-tree'\n\nimport { Feature, getContainingView, getSession } from '@jbrowse/core/util'\nimport { bpToPx } from '@jbrowse/core/util/Base1DUtils'\nimport { MismatchParser } from '@jbrowse/plugin-alignments'\nimport { reaction, autorun } from 'mobx'\n\n// locals\nimport { LinearSyntenyViewModel } from '../LinearSyntenyView/model'\nimport { drawMouseoverSynteny, drawRef } from './drawSynteny'\nimport { LinearSyntenyDisplayModel } from './model'\n\ninterface Pos {\n offsetPx: number\n}\n\ninterface FeatPos {\n p11: Pos\n p12: Pos\n p21: Pos\n p22: Pos\n f: Feature\n cigar: string[]\n}\n\ntype LSV = LinearSyntenyViewModel\n\nexport function doAfterAttach(self: LinearSyntenyDisplayModel) {\n addDisposer(\n self,\n autorun(() => {\n const view = getContainingView(self) as LinearSyntenyViewModel\n if (!view.initialized) {\n return\n }\n const ctx1 = self.mainCanvas?.getContext('2d')\n const ctx3 = self.cigarClickMapCanvas?.getContext('2d')\n if (!ctx1 || !ctx3) {\n return\n }\n\n const height = view.middleComparativeHeight\n const width = view.width\n ctx1.clearRect(0, 0, width, height)\n ctx3.clearRect(0, 0, width, height)\n drawRef(self, ctx1, ctx3)\n }),\n )\n\n addDisposer(\n self,\n autorun(() => {\n const view = getContainingView(self) as LinearSyntenyViewModel\n if (!view.initialized) {\n return\n }\n drawMouseoverSynteny(self)\n }),\n )\n\n // this attempts to reduce recalculation of feature positions drawn by\n // the synteny view\n //\n // uses a reaction to say \"we know the positions don't change in any\n // relevant way unless bpPerPx changes or displayedRegions changes\"\n addDisposer(\n self,\n reaction(\n () => {\n const view = getContainingView(self) as LSV\n return {\n bpPerPx: view.views.map(v => v.bpPerPx),\n\n // stringifying 'deeply' accesses the displayed regions, see\n // issue #3456\n displayedRegions: JSON.stringify(\n view.views.map(v => v.displayedRegions),\n ),\n features: self.features,\n initialized: view.initialized,\n }\n },\n ({ initialized }) => {\n if (!initialized) {\n return\n }\n const { assemblyManager } = getSession(self)\n const view = getContainingView(self) as LSV\n const viewSnaps = view.views.map(view => ({\n ...getSnapshot(view),\n width: view.width,\n staticBlocks: view.staticBlocks,\n interRegionPaddingWidth: view.interRegionPaddingWidth,\n minimumBlockWidth: view.minimumBlockWidth,\n }))\n\n const map = [] as FeatPos[]\n const feats = self.features || []\n\n for (const f of feats) {\n const mate = f.get('mate')\n let f1s = f.get('start')\n let f1e = f.get('end')\n const f2s = mate.start\n const f2e = mate.end\n\n if (f.get('strand') === -1) {\n ;[f1e, f1s] = [f1s, f1e]\n }\n const a1 = assemblyManager.get(f.get('assemblyName'))\n const a2 = assemblyManager.get(mate.assemblyName)\n const r1 = f.get('refName')\n const r2 = mate.refName\n const ref1 = a1?.getCanonicalRefName(r1) || r1\n const ref2 = a2?.getCanonicalRefName(r2) || r2\n const v1 = viewSnaps[0]!\n const v2 = viewSnaps[1]!\n const p11 = bpToPx({ self: v1, refName: ref1, coord: f1s })\n const p12 = bpToPx({ self: v1, refName: ref1, coord: f1e })\n const p21 = bpToPx({ self: v2, refName: ref2, coord: f2s })\n const p22 = bpToPx({ self: v2, refName: ref2, coord: f2e })\n\n if (\n p11 === undefined ||\n p12 === undefined ||\n p21 === undefined ||\n p22 === undefined\n ) {\n continue\n }\n\n const cigar = f.get('CIGAR') as string | undefined\n map.push({\n p11,\n p12,\n p21,\n p22,\n f,\n cigar: MismatchParser.parseCigar(cigar),\n })\n }\n\n self.setFeatPositions(map)\n },\n { fireImmediately: true },\n ),\n )\n}\n","import React from 'react'\nimport {\n assembleLocString,\n doesIntersect2,\n getSession,\n isSessionModelWithWidgets,\n Feature,\n getContainingTrack,\n getContainingView,\n} from '@jbrowse/core/util'\n\n// locals\nimport { getId, MAX_COLOR_RANGE } from '../drawSynteny'\nimport { LinearSyntenyDisplayModel } from '../model'\n\ninterface Pos {\n offsetPx: number\n}\n\nexport interface ClickCoord {\n clientX: number\n clientY: number\n feature: { f: Feature }\n}\n\ninterface FeatPos {\n p11: Pos\n p12: Pos\n p21: Pos\n p22: Pos\n f: Feature\n cigar: string[]\n}\n\nexport function drawMatchSimple({\n feature,\n ctx,\n offsets,\n cb,\n height,\n drawCurves,\n oobLimit,\n viewWidth,\n hideTiny,\n}: {\n feature: FeatPos\n ctx: CanvasRenderingContext2D\n offsets: number[]\n oobLimit: number\n viewWidth: number\n cb: (ctx: CanvasRenderingContext2D) => void\n height: number\n drawCurves?: boolean\n hideTiny?: boolean\n}) {\n const { p11, p12, p21, p22 } = feature\n\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n const minX = Math.min(x21, x22)\n const maxX = Math.max(x21, x22)\n\n if (!doesIntersect2(minX, maxX, -oobLimit, viewWidth + oobLimit)) {\n return\n }\n\n // drawing a line if the results are thin: drawing a line results in much\n // less pixellation than filling in a thin polygon\n if (l1 <= 1 && l2 <= 1) {\n // hideTiny can be used to avoid drawing mouseover for thin lines in this\n // case\n if (!hideTiny) {\n ctx.beginPath()\n ctx.moveTo(x11, y1)\n if (drawCurves) {\n ctx.bezierCurveTo(x11, mid, x21, mid, x21, y2)\n } else {\n ctx.lineTo(x21, y2)\n }\n ctx.stroke()\n }\n } else {\n draw(ctx, x11, x12, y1, x22, x21, y2, mid, drawCurves)\n cb(ctx)\n }\n}\n\nexport function draw(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n mid: number,\n drawCurves?: boolean,\n) {\n if (drawCurves) {\n drawBezierBox(ctx, x1, x2, y1, x3, x4, y2, mid)\n } else {\n drawBox(ctx, x1, x2, y1, x3, x4, y2)\n }\n}\n\nexport function drawBox(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n) {\n ctx.beginPath()\n ctx.moveTo(x1, y1)\n ctx.lineTo(x2, y1)\n ctx.lineTo(x3, y2)\n ctx.lineTo(x4, y2)\n ctx.closePath()\n ctx.fill()\n}\n\nexport function drawBezierBox(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n mid: number,\n) {\n const len1 = Math.abs(x1 - x2)\n const len2 = Math.abs(x1 - x2)\n\n // heuristic to not draw hourglass inversions with bezier curves when they\n // are thin and far apart because it results in areas that are not drawn well\n // demo https://codesandbox.io/s/fast-glitter-q3b1or?file=/src/index.js\n if (len1 < 5 && len2 < 5 && x2 < x1 && Math.abs(x1 - x3) > 100) {\n const tmp = x1\n x1 = x2\n x2 = tmp\n }\n ctx.beginPath()\n ctx.moveTo(x1, y1)\n ctx.lineTo(x2, y1)\n ctx.bezierCurveTo(x2, mid, x3, mid, x3, y2)\n ctx.lineTo(x4, y2)\n ctx.bezierCurveTo(x4, mid, x1, mid, x1, y1)\n ctx.closePath()\n ctx.fill()\n}\n\nexport function onSynClick(\n event: React.MouseEvent,\n model: LinearSyntenyDisplayModel,\n) {\n const view = getContainingView(model)\n const track = getContainingTrack(model)\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const x = event.clientX - rect.left\n const y = event.clientY - rect.top\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n const feat = model.featPositions[id]\n if (feat) {\n const { f } = feat\n model.setClickId(f.id())\n const session = getSession(model)\n if (isSessionModelWithWidgets(session)) {\n session.showWidget(\n session.addWidget('BaseFeatureWidget', 'baseFeature', {\n view,\n track,\n featureData: f.toJSON(),\n }),\n )\n }\n }\n return feat\n}\n\nexport function onSynContextClick(\n event: React.MouseEvent,\n model: LinearSyntenyDisplayModel,\n setAnchorEl: (arg: ClickCoord) => void,\n) {\n event.preventDefault()\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const { clientX, clientY } = event\n const x = clientX - rect.left\n const y = clientY - rect.top\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n const f = model.featPositions[id]\n if (f) {\n model.setClickId(f.f.id())\n setAnchorEl({ clientX, clientY, feature: f })\n }\n}\n\nexport function getTooltip(f: Feature, cigarOp?: string, cigarOpLen?: string) {\n // @ts-expect-error\n const f1 = f.toJSON() as {\n refName: string\n start: number\n end: number\n strand?: number\n assemblyName: string\n identity?: number\n name?: string\n mate: {\n start: number\n end: number\n refName: string\n name: string\n }\n }\n const f2 = f1.mate\n const l1 = f1.end - f1.start\n const l2 = f2.end - f2.start\n const identity = f1.identity\n const n1 = f1.name\n const n2 = f2.name\n return [\n `Loc1: ${assembleLocString(f1)}`,\n `Loc2: ${assembleLocString(f2)}`,\n `Inverted: ${f1.strand === -1}`,\n `Query len: ${l1.toLocaleString('en-US')}`,\n `Target len: ${l2.toLocaleString('en-US')}`,\n identity ? `Identity: ${identity.toPrecision(2)}` : '',\n cigarOp ? `CIGAR operator: ${cigarOp}${cigarOpLen}` : '',\n n1 ? `Name 1: ${n1}` : '',\n n2 ? `Name 1: ${n2}` : '',\n ]\n .filter(f => !!f)\n .join('<br/>')\n}\n","import { doesIntersect2, getContainingView } from '@jbrowse/core/util'\n// locals\nimport { LinearSyntenyViewModel } from '../LinearSyntenyView/model'\nimport { LinearSyntenyDisplayModel } from './model'\nimport { draw, drawMatchSimple } from './components/util'\n\nexport const MAX_COLOR_RANGE = 255 * 255 * 255 // max color range\n\nfunction makeColor(idx: number) {\n const r = Math.floor(idx / (255 * 255)) % 255\n const g = Math.floor(idx / 255) % 255\n const b = idx % 255\n return `rgb(${r},${g},${b})`\n}\n\nconst colorMap = {\n I: '#ff03',\n N: '#0a03',\n D: '#00f3',\n X: 'brown',\n M: '#f003',\n '=': '#f003',\n}\n\nconst lineLimit = 3\n\nconst oobLimit = 1600\n\nexport function getId(r: number, g: number, b: number, unitMultiplier: number) {\n return Math.floor((r * 255 * 255 + g * 255 + b - 1) / unitMultiplier)\n}\n\nexport function drawRef(\n model: LinearSyntenyDisplayModel,\n ctx1: CanvasRenderingContext2D,\n ctx3?: CanvasRenderingContext2D,\n) {\n const view = getContainingView(model) as LinearSyntenyViewModel\n const drawCurves = view.drawCurves\n const drawCIGAR = view.drawCIGAR\n const height = view.middleComparativeHeight\n const width = view.width\n const bpPerPxs = view.views.map(v => v.bpPerPx)\n\n if (ctx3) {\n ctx3.imageSmoothingEnabled = false\n }\n\n ctx1.beginPath()\n const featPos = model.featPositions\n const offsets = view.views.map(v => v.offsetPx)\n\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / featPos.length)\n\n // this loop is optimized to draw many thin lines with a single ctx.stroke\n // call, a separate loop below draws larger boxes\n ctx1.fillStyle = colorMap.M\n ctx1.strokeStyle = colorMap.M\n for (const { p11, p12, p21, p22 } of featPos) {\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n\n // drawing a line if the results are thin results in much less pixellation\n // than filling in a thin polygon\n if (\n l1 <= lineLimit &&\n l2 <= lineLimit &&\n x21 < width + oobLimit &&\n x21 > -oobLimit\n ) {\n ctx1.moveTo(x11, y1)\n if (drawCurves) {\n ctx1.bezierCurveTo(x11, mid, x21, mid, x21, y2)\n } else {\n ctx1.lineTo(x21, y2)\n }\n }\n }\n ctx1.stroke()\n\n // this loop only draws small lines as a polyline, the polyline calls\n // ctx.stroke once is much more efficient than calling stroke() many times\n ctx1.fillStyle = colorMap.M\n ctx1.strokeStyle = colorMap.M\n for (const { p11, p12, p21, p22, f, cigar } of featPos) {\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const minX = Math.min(x21, x22)\n const maxX = Math.max(x21, x22)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n\n if (\n !(l1 <= lineLimit && l2 <= lineLimit) &&\n doesIntersect2(minX, maxX, -oobLimit, view.width + oobLimit)\n ) {\n const s1 = f.get('strand')\n const k1 = s1 === -1 ? x12 : x11\n const k2 = s1 === -1 ? x11 : x12\n\n // rev1/rev2 flip the direction of the CIGAR drawing in horizontally flipped\n // modes. somewhat heuristically determined, but tested for\n const rev1 = k1 < k2 ? 1 : -1\n const rev2 = (x21 < x22 ? 1 : -1) * s1\n\n // cx1/cx2 are the current x positions on top and bottom rows\n let cx1 = k1\n let cx2 = s1 === -1 ? x22 : x21\n if (cigar.length && drawCIGAR) {\n // continuingFlag skips drawing commands on very small CIGAR features\n let continuingFlag = false\n\n // px1/px2 are the previous x positions on the top and bottom rows\n let px1 = 0\n let px2 = 0\n const unitMultiplier2 = Math.floor(MAX_COLOR_RANGE / cigar.length)\n for (let j = 0; j < cigar.length; j += 2) {\n const idx = j * unitMultiplier2 + 1\n\n const len = +cigar[j]!\n const op = cigar[j + 1] as keyof typeof colorMap\n\n if (!continuingFlag) {\n px1 = cx1\n px2 = cx2\n }\n\n const d1 = len / bpPerPxs[0]!\n const d2 = len / bpPerPxs[1]!\n\n if (op === 'M' || op === '=' || op === 'X') {\n cx1 += d1 * rev1\n cx2 += d2 * rev2\n } else if (op === 'D' || op === 'N') {\n cx1 += d1 * rev1\n }\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n else if (op === 'I') {\n cx2 += d2 * rev2\n }\n\n // check that we are even drawing in view here, e.g. that all\n // points are not all less than 0 or greater than width\n if (\n !(\n Math.max(px1, px2, cx1, cx2) < 0 ||\n Math.min(px1, px2, cx1, cx2) > width\n )\n ) {\n // if it is a small feature and not the last element of the\n // CIGAR (which could skip rendering it entire if we did turn\n // it on), then turn on continuing flag\n const isNotLast = j < cigar.length - 2\n if (\n Math.abs(cx1 - px1) <= 1 &&\n Math.abs(cx2 - px2) <= 1 &&\n isNotLast\n ) {\n continuingFlag = true\n } else {\n // allow rendering the dominant color when using continuing flag\n // if the last element of continuing was a large feature, else\n // just use match\n ctx1.fillStyle =\n colorMap[(continuingFlag && d1 > 1) || d2 > 1 ? op : 'M']\n continuingFlag = false\n\n draw(ctx1, px1, cx1, y1, cx2, px2, y2, mid, drawCurves)\n if (ctx3) {\n ctx3.fillStyle = makeColor(idx)\n draw(ctx3, px1, cx1, y1, cx2, px2, y2, mid, drawCurves)\n }\n }\n }\n }\n } else {\n draw(ctx1, x11, x12, y1, x22, x21, y2, mid, drawCurves)\n }\n }\n }\n\n // draw click map\n const ctx2 = model.clickMapCanvas?.getContext('2d')\n if (!ctx2) {\n return\n }\n ctx2.imageSmoothingEnabled = false\n ctx2.clearRect(0, 0, width, height)\n for (let i = 0; i < featPos.length; i++) {\n const feature = featPos[i]!\n const idx = i * unitMultiplier + 1\n ctx2.fillStyle = makeColor(idx)\n\n // too many click map false positives with colored stroked lines\n drawMatchSimple({\n cb: ctx => {\n ctx.fill()\n },\n feature,\n ctx: ctx2,\n drawCurves,\n offsets,\n oobLimit,\n viewWidth: view.width,\n hideTiny: true,\n height,\n })\n }\n return undefined\n}\n\nexport function drawMouseoverSynteny(model: LinearSyntenyDisplayModel) {\n const { clickId, mouseoverId } = model\n const highResolutionScaling = 1\n const view = getContainingView(model) as LinearSyntenyViewModel\n const drawCurves = view.drawCurves\n const height = view.middleComparativeHeight\n const width = view.width\n const ctx = model.mouseoverCanvas?.getContext('2d')\n const offsets = view.views.map(v => v.offsetPx)\n\n if (!ctx) {\n return\n }\n ctx.resetTransform()\n ctx.scale(highResolutionScaling, highResolutionScaling)\n ctx.clearRect(0, 0, width, height)\n const feature1 = model.featMap[mouseoverId || '']\n if (feature1) {\n ctx.fillStyle = 'rgb(0,0,0,0.1)'\n drawMatchSimple({\n cb: ctx => {\n ctx.fill()\n },\n feature: feature1,\n ctx,\n oobLimit,\n viewWidth: view.width,\n drawCurves,\n offsets,\n height,\n })\n }\n const feature2 = model.featMap[clickId || '']\n if (feature2) {\n ctx.strokeStyle = 'rgb(0, 0, 0, 0.9)'\n\n drawMatchSimple({\n cb: ctx => {\n ctx.stroke()\n },\n feature: feature2,\n ctx,\n oobLimit,\n viewWidth: view.width,\n drawCurves,\n offsets,\n height,\n })\n }\n}\n"],"names":["doAfterAttach","self","addDisposer","autorun","view","getContainingView","initialized","ctx1","mainCanvas","getContext","ctx3","cigarClickMapCanvas","height","middleComparativeHeight","width","clearRect","drawRef","drawMouseoverSynteny","reaction","bpPerPx","views","map","v","displayedRegions","JSON","stringify","features","assemblyManager","getSession","viewSnaps","getSnapshot","staticBlocks","interRegionPaddingWidth","minimumBlockWidth","feats","f","mate","get","f1s","f1e","f2s","start","f2e","end","a1","a2","assemblyName","r1","r2","refName","ref1","getCanonicalRefName","ref2","v1","v2","p11","bpToPx","coord","p12","p21","p22","undefined","cigar","push","MismatchParser","setFeatPositions","fireImmediately","drawMatchSimple","feature","ctx","offsets","cb","drawCurves","oobLimit","viewWidth","hideTiny","x11","offsetPx","x12","x21","x22","l1","Math","abs","l2","y2","mid","minX","min","maxX","max","doesIntersect2","beginPath","moveTo","bezierCurveTo","lineTo","stroke","draw","x1","x2","y1","x3","x4","len1","len2","tmp","closePath","fill","drawBezierBox","drawBox","onSynClick","event","model","track","getContainingTrack","clickMapCanvas","rect","getBoundingClientRect","ctx2","x","clientX","left","y","clientY","top","g1","b1","getImageData","data","unitMultiplier","floor","MAX_COLOR_RANGE","numFeats","id","getId","feat","featPositions","setClickId","session","isSessionModelWithWidgets","showWidget","addWidget","featureData","toJSON","onSynContextClick","setAnchorEl","preventDefault","getTooltip","cigarOp","cigarOpLen","f1","f2","identity","n1","name","n2","assembleLocString","strand","toLocaleString","toPrecision","filter","join","makeColor","idx","colorMap","I","N","D","X","M","lineLimit","r","g","b","drawCIGAR","bpPerPxs","imageSmoothingEnabled","featPos","length","fillStyle","strokeStyle","s1","k1","rev1","rev2","cx1","cx2","continuingFlag","px1","px2","unitMultiplier2","j","len","op","d1","d2","isNotLast","i","clickId","mouseoverId","mouseoverCanvas","resetTransform","scale","feature1","featMap","feature2"],"sourceRoot":""}